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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGCTCAAGCGCCTCAAGCAGTTTGCGCAGATGAACAAGCTCAAGAAGGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGGgtgcgtgggaagcgcgagaggcggaggcgggagggcaggcagtcactgccgaagttctggacgcggtgggattctggaccctggatccgcccaagcgcgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05903
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15702693|gb|BI726998.1|BI726998
EST:     GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGG                         GTCTGAAGGAGCTGTTC
genomic: GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGGgtgcgtggga ... tgatgcgcagGTCTGAAGGAGCTGTTC
EST: gi|10780116|gb|AV636796.1|AV636796
EST:     GCCGGACGAGATCGCGG                         GTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
genomic: GCCGGACGAGATCGCGGgtgcgtggga ... tgatgcgcagGTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
EST: gi|161807683|gb|FC096417.1|FC096417
EST:     GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGG                         GTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
genomic: GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGGgtgcgtggga ... tgatgcgcagGTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
EST: gi|161820226|gb|FC108651.1|FC108651
EST:     GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGG                         GTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
genomic: GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGGgtgcgtggga ... tgatgcgcagGTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
EST: gi|161815943|gb|FC103508.1|FC103508
EST:     GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGG                         GTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
genomic: GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGGgtgcgtggga ... tgatgcgcagGTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
EST: gi|9028390|gb|BE238430.1|BE238430
EST:     GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGG                         GTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCTTCA
genomic: GGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGGgtgcgtggga ... tgatgcgcagGTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
EST: gi|161793226|gb|FC079568.1|FC079568
EST:     ACGCCGGACGAGATCGCGG                         GTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA
genomic: ACGCCGGACGAGATCGCGGgtgcgtggga ... tgatgcgcagGTCTGAAGGAGCTGTTCAAGTCCATCGACGCGGACGGCAGCGGCACCATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTGCTCAAGCGCCTCAAGCAGTTTGCGCAGATGAACAAGCTCAAGAAGGCATGTCTCATGGTCATCGGCCAGCACCTGACGCCGGACGAGATCGCGGgtgcgtgggaagcgcgagaggcggaggcgggagggcaggcagtcactgccgaagttctggacgcggtgggattctggaccctggatccgcccaagcgcgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaagc