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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCAAGGCCGACCAGTCGCTGGCCAAGATCCGCAAGTACAAGGTCATCAAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtaggaaggcgcggtatcactcaacacgcatagtttcagcagggcgccgggtctcaactgttggttggaccagctacagtcatacggtatgtagactgaacaccagcttactcctcctgctcacgctgtcgacccgctgttgcccccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05305
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23361766|gb|BU649586.1|BU649586
EST:     AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG                         CCCCAGCCAGCGCACGCCCATTAAGAACTTCTTCCTGGCTGGCGACTTCAC
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
EST: gi|9441502|gb|BE441992.1|BE441992
EST:     AAGACGCCGCTGTCTGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG                         CCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
EST: gi|15372155|gb|BI531581.1|BI531581
EST:     AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG                         CCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
EST: gi|161812516|gb|FC098592.1|FC098592
EST:     AAGACGCCGCTGTCTGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG                         CCCCAGTCAGCGCACGCCCATCAAG
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAG
EST: gi|161804116|gb|FC092159.1|FC092159
EST:     AAGACGCCGCTGTCTGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCG                         CCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC
genomic: AAGACGCCGCTGTCCGTGTACGAGAGCCGCGCCGGCCGCGAGGCCTTCCGgtgagtagga ... gcccccgcagCCCCAGCCAGCGCACGCCCATCAAGAACTTCTTCCTGGCGGGCGACTTCAC