1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTCGGCTCGCCCAAGATTGTGAACGACGGTGTGACCATTGCTCGCGAGGTGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgtgggtgcgtgcttggtcaccgtgggtgagcgcccgggggggataggcgtctatgaacgacatgtggaaaagggcgtggcgaaggcggagta...
species | Chlamydomonas reinhardtii |
transcript | EDP03982 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACCEST: gi|49465644|gb|BP093557.1|BP093557
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATEST: gi|10786054|gb|AV642726.1|AV642726
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGAT
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACCEST: gi|49467062|gb|BP094975.1|BP094975
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGEST: gi|6552100|gb|AV397884.1|AV397884
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATG
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACCEST: gi|22051882|gb|BQ809934.1|BQ809934
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGACACCEST: gi|6547392|gb|AV393176.1|AV393176
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACCEST: gi|49465381|gb|BP093294.1|BP093294
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACAEST: gi|6546630|gb|AV392414.1|AV392414
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACA
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACCEST: gi|15702828|gb|BI727133.1|BI727133
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
EST: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACCEST: gi|16072229|gb|BI874225.1|BI874225
genomic: TGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
EST: GGAGCTGGAGGACCCCGTGGAGAAACATCGGCGCCAAGCTGGTACGCCAG GCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
genomic: GGAGCTGGAGGACCCCGTGGAG-AACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgt ... gtgcccgcagGCCGCTGCCCGCACCAACGACACCGCTGGTGATGGCACCACCACCGCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGGCTCGCCCAAGATTGTGAACGACGGTGTGACCATTGCTCGCGAGGTGGAGCTGGAGGACCCCGTGGAGAACATCGGCGCCAAGCTGGTCCGCCAGgtgggtgtgtgggtgcgtgcttggtcaccgtgggtgagcgcccgggggggataggcgtctatgaacgacatgtggaaaagggcgtggcgaaggcggagta
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggaa