1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGCTACTTCGTGGAGGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTGgtgagcgggctggggaagggggctggtggtcgggtgacagtgggcatatgaaggtcagtggttgatgtcgggggctgcgttgggcgcggggcttgcgctt...
species | Chlamydomonas reinhardtii |
transcript | EDP02792 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTG GCCTGGACTCGGGCAGCTTCTACCCCTACGTGATTGCCACCGTCATCGCCAEST: gi|16071862|gb|BI873858.1|BI873858
genomic: GGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTGgtgagcgggc ... ccctctccagGCCTGGACTCGGGCAGCTTCTACCCCTACGTGATTGCCACCGTCATCGCCA
EST: GGGTGATCACGTGGTGACGGCGGAGGCCTNCCGCACCTTCCAGTTCACTG GCCTGGACTCGGGCAGEST: gi|16072830|gb|BI874826.1|BI874826
genomic: GGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTGgtgagcgggc ... ccctctccagGCCTGGACTCGGGCAG
EST: GGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTG GCCTGGACTCGGGCAGCTTCTACCCCTACGTGATTGCCACCGTCATCGCCAEST: gi|161800274|gb|FC084430.1|FC084430
genomic: GGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTGgtgagcgggc ... ccctctccagGCCTGGACTCGGGCAGCTTCTACCCCTACGTGATTGCCACCGTCATCGCCA
EST: GGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTG GCCTGGACTCGGGCAGCTTCTACCCCTACGTGATTGCCACCGTCATCGCCA
genomic: GGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTGgtgagcgggc ... ccctctccagGCCTGGACTCGGGCAGCTTCTACCCCTACGTGATTGCCACCGTCATCGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGTCCGTGGCTACAACGCCTGGTCGCCGGCTCAGCGCTACTTCGTGGAGGGTGATCACGTGGTGACGGCGGAGGCCTCCCGCACCTTCCAGTTCACTGgtgagcgggctggggaagggggctggtggtcgggtgacagtgggcatatgaaggtcagtggttgatgtcgggggctgcgttgggcgcggggcttgcgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgttg