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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGACTTTGCCGAGTTCCCCGGCGCCGTGGCGGTGACCACCAACTGCGTGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggggcttgggggggggggacgtattacttaacgatgatacgtacggatggcacatgtcgcatgcagggctgcgctgcgcttgagagctagcat...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02255
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49465972|gb|BP093885.1|BP093885
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|161808949|gb|FC094394.1|FC094394
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|16433807|gb|BI999033.1|BI999033
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|161815479|gb|FC104844.1|FC104844
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|10779859|gb|AV636539.1|AV636539
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|49464502|gb|BP092415.1|BP092415
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|23364636|gb|BU652456.1|BU652456
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|15700362|gb|BI724667.1|BI724667
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTG
EST: gi|23364480|gb|BU652300.1|BU652300
EST:     TGGTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|15700196|gb|BI724501.1|BI724501
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGTCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|14238410|gb|BG857226.1|BG857226
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATTCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
EST: gi|10126783|gb|BE725487.1|BE725487
EST:     TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAG                         ACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG
genomic: TGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggg ... ccacctgcagACCGGCCTGTCGGGCGTGCCGCACATCCGCCCCGACGCCAACGGGCACAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTGACTTTGCCGAGTTCCCCGGCGCCGTGGCGGTGACCACCAACTGCGTGCTGGACCCGCTCCAGGTGTACAAGCAGAACATCTTCACCATCAACGAGgtgggcaggggcttgggggggggggacgtattacttaacgatgatacgtacggatggcacatgtcgcatgcagggctgcgctgcgcttgagagctagcat

- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgctt