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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTTCAAGGGCGACCCGCCCCTGCACCTCAAGATCGCGGCGGGCCTCACCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcgtcctggtggctttgggtgtatgtgcgtcgtgcgcatgtttctagctcgtactgcttacagtgctgacaccgtacgggtaatgctgggggatggacgtttgccaccaccatacgttcgcacatgtgcacatgtttgcgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01675
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8576473|gb|BE129014.1|BE129014
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATC
EST: gi|10127075|gb|BE725779.1|BE725779
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCG
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCG
EST: gi|15367917|gb|BI527343.1|BI527343
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|161819692|gb|FC110730.1|FC110730
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|8513770|gb|BE121665.1|BE121665
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|14235024|gb|BG853840.1|BG853840
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|10778258|gb|AV634938.1|AV634938
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|23363493|gb|BU651313.1|BU651313
EST:     CACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGGAGGGCAAAGCTGGCTCCCGGTG
genomic: CACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCC-ACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGG-AGGGCAA-GCTGGCTCCCGGTG
EST: gi|10127372|gb|BE726076.1|BE726076
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|15705113|gb|BI729402.1|BI729402
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|49459638|gb|BP087551.1|BP087551
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|9210580|gb|BE337495.1|BE337495
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|10770885|gb|AV621708.1|AV621708
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|8400964|gb|BE056598.1|BE056598
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|8933158|gb|BE227919.1|BE227919
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|10125696|gb|BE724400.1|BE724400
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|15373603|gb|BI533029.1|BI533029
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|161812247|gb|FC097815.1|FC097815
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|161810681|gb|FC096834.1|FC096834
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
EST: gi|15910544|gb|BI816399.1|BI816399
EST:     CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAG                         GTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC
genomic: CCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGgtgagcggcg ... ttgcgcgcagGTACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTAC