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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCCCTCGTGAGGATGCCACCCGTATCGGCTCCGCCGGTGTGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtgacctcttgatatgagcgcgggttcttcagcggggatcacggcggatcggtagcggcggccatataagttccggcactgccttcggcgcagt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01658
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15372060|gb|BI531486.1|BI531486
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|7687072|gb|AW757720.1|AW757720
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|34990620|gb|CF564537.1|CF564537
EST:     TGGTGCGCCGCCAGGCCGACGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|49467185|gb|BP095098.1|BP095098
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCC
EST: gi|34990619|gb|CF564536.1|CF564536
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|6544623|gb|AV390407.1|AV390407
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|34984023|gb|CF557940.1|CF557940
EST:     TGGTGCGCCGCCAGGACGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCCGCGAGGCCGCCTTCCGCAACAT
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCC-GCGAGGCCGCCTTCCGCAACAT
EST: gi|7545796|gb|AW676284.1|AW676284
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|49459862|gb|BP087775.1|BP087775
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|22070734|gb|BQ820072.1|BQ820072
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|34991893|gb|CF565810.1|CF565810
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|7545578|gb|AW676066.1|AW676066
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|22076848|gb|BQ825624.1|BQ825624
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|15367729|gb|BI527155.1|BI527155
EST:     TGGTGCGCCGCCAGGCCGNCGATATCTCGCCCCTGCGCCGCGTNAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|34990246|gb|CF564163.1|CF564163
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|49467797|gb|BP095658.1|BP095658
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|34985639|gb|CF559556.1|CF559556
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|22074894|gb|BQ823670.1|BQ823670
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|49469762|gb|BP097623.1|BP097623
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCG
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCG
EST: gi|15701424|gb|BI725729.1|BI725729
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|6552163|gb|AV397947.1|AV397947
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|14237243|gb|BG856059.1|BG856059
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|22050075|gb|BQ809058.1|BQ809058
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|10778592|gb|AV635272.1|AV635272
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAAC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAAC
EST: gi|6552159|gb|AV397943.1|AV397943
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|22076703|gb|BQ825479.1|BQ825479
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGNCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|49469184|gb|BP097045.1|BP097045
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|49469841|gb|BP097702.1|BP097702
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGG
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGG
EST: gi|34994187|gb|CF568104.1|CF568104
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGGCCGCGAGGCCGCCTTCCG
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCG
EST: gi|15367825|gb|BI527251.1|BI527251
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|34994188|gb|CF568105.1|CF568105
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGGGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|14242403|gb|BG861219.1|BG861219
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|22074623|gb|BQ823546.1|BQ823546
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|7593508|gb|AW707759.1|AW707759
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATC
EST: gi|34988453|gb|CF562370.1|CF562370
EST:     TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAG                         GCCATCTACCTGCTGACCACTG
genomic: TGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtga ... atgtgcacagGCCATCTACCTGCTGACCACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCCCTCGTGAGGATGCCACCCGTATCGGCTCCGCCGGTGTGGTGCGCCGCCAGGCCGTCGATATCTCGCCCCTGCGCCGCGTCAACCAGgtgcgtgtgacctcttgatatgagcgcgggttcttcagcggggatcacggcggatcggtagcggcggccatataagttccggcactgccttcggcgcagt

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