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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCGCGGCTCGCCCGAGACCCTCCGCGACCCTCGCGGCTTCGCGGTCAAGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggcatggggaggaggagggaaggacggaggggctgcttggcgcgcataaggccgcatacggagggcctttgcttgtaggctctggtaggcccaccttccgccgcggcccgcgctatgtatccacttcgccccactactggctcttcctctttcaatgcttgccag

Basic information

species Chlamydomonas reinhardtii
transcript EDP00871
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22068250|gb|BQ818189.1|BQ818189
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACA-CATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACA
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACA
EST: gi|7687778|gb|AW758424.1|AW758424
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
EST: gi|15697484|gb|BI721789.1|BI721789
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GAGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCCTT
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCC-TT
EST: gi|22069902|gb|BQ819380.1|BQ819380
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
EST: gi|23361192|gb|BU649012.1|BU649012
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
EST: gi|14240802|gb|BG859618.1|BG859618
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
EST: gi|6547218|gb|AV393002.1|AV393002
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
EST: gi|15691958|gb|BI716263.1|BI716263
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATG
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATG
EST: gi|22064859|gb|BQ816064.1|BQ816064
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
EST: gi|34985582|gb|CF559499.1|CF559499
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCG
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCG
EST: gi|14239601|gb|BG858417.1|BG858417
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
EST: gi|34986788|gb|CF560705.1|CF560705
EST:     -GTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACCACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATG
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATG
EST: gi|14227441|gb|BG846257.1|BG846257
EST:     GTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGGCCG                         -TGTTCTTTATCC-CGGACGGCATGGAGTTCCCGGGCATGGGCTCACGCC
genomic: GTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATG-CCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCG-ACGGCATGAAGTTCCCGGACATGGT-TCACGCC
EST: gi|22076101|gb|BQ824877.1|BQ824877
EST:     AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCG                         GTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC
genomic: AGTTCTACACACGTGAGGGCAATTTCGACATGGTCGGCAACAACATGCCGgtgaggaggc ... tgcttgccagGTGTTCTTCATCCGCGACGGCATGAAGTTCCCGGACATGGTTCACGCCTTC