Sequence
atgc intronic sequence ATGC exonic sequenceGCTCATCACACCCTTCAACTTCCCGCTGGAGATCCCGGCGCTGCAGCTCATGGGCGCCCTGTACATGGGCAATAAGCCGCTGCTGCACGTGGACCAGCGGgtgcggcggcggcaggaggagggggcagggccaagggggggtagccatccatgggggggtgggaggagggggcaaggggaggcaggggaggagggggagc...
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP00620 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDP00620 (Chlamydomonas reinhardtii), 5'ss of exon 5
lower sequence: EFJ29772 (Selaginella moellendorffii), 5'ss of exon 7
GCTCATCACACCCTTCAACTTCCCGCTGGAGATCCCGGCGCTGCAGCTCATGGGCGCCCTGTACATGGGCAATAAGCCGCTGCTGCACGTGGACCAGCGGgtgcggcggcggcaggaggagggggcagggccaagggggggtagccatccatgggggggtgggaggagggggcaaggggaggcaggggaggagggggagc
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TATCATCACACCATTCAATTTTCCCTTGGAGATACCGGTGCTCCAGCTTATGGGGGCACTCTACATGGGCAATAAGGCTCTGGTGAAAGTTGATAGCAAGgtttgccagtaccttttctttcttgagatgcggaaagtagttgaaactttgcag----------------------------------------------
upper sequence: EDP00620 (Chlamydomonas reinhardtii), 5'ss of exon 5
lower sequence: EFJ08918 (Selaginella moellendorffii), 5'ss of exon 7
GCTCATCACACCCTTCAACTTCCCGCTGGAGATCCCGGCGCTGCAGCTCATGGGCGCCCTGTACATGGGCAATAAGCCGCTGCTGCACGTGGACCAGCGGgtgcggcggcggcaggaggagggggcagggccaagggggggtagccatccatgggggggtgggaggagggggcaaggggaggcaggggaggagggggagc
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TATCATCACACCATTCAATTTTCCTTTGGAGATACCGGTGCTCCAGCTTATGGGGGCACTCTACATGGGCAATAAGGCTCTGGTGAAAGTTGATAGCAAGgtttgccagtaccttttctttcttgagatgcagaaagtagttgaaactttgcag----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10768750|gb|AV619575.1|AV619575EST: CGCCCTGTACATGGGCAATAAGCCGCTGCTGCACGTGGACCAGCGG GTATCGGTTGTGGCGGAGCAGCTGGTGCGGCTGCTGGCGCACTGCGGCATG
genomic: CGCCCTGTACATGGGCAATAAGCCGCTGCTGCACGTGGACCAGCGGgtgcggcggc ... cacctggcagGTATCGGTTGTGGCGGAGCAGCTGGTGCGGCTGCTGGCGCACTGCGGCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCATCACACCCTTCAACTTCCCGCTGGAGATCCCGGCGCTGCAGCTCATGGGCGCCCTGTACATGGGCAATAAGCCGCTGCTGCACGTGGACCAGCGGgtgcggcggcggcaggaggagggggcagggccaagggggggtagccatccatgggggggtgggaggagggggcaaggggaggcaggggaggagggggagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC