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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGCCGTGATGGGCTTCGCGCTGgtgagtgcgtgtttgtcagctgcctgaatggtttacgcacgagggcgctatctgtaaatgacatgtgcgtgggtccggcaatcagacacggacaccgacgactgtgtcgtctaacgtgccgtaccgtctgcatcgacgtggcgcaacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99485
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22073579|gb|BQ822917.1|BQ822917
EST:     GCCGTGATGGGCTTCGCGCTG                         GTGTGGGGCGGCAAGGGCGCCGTTGTGTGGAACGACCATAAGCCAGAGTTC
genomic: GCCGTGATGGGCTTCGCGCTGgtgagtgcgt ... ggcgcaacagGTGTGGGGCGGCAAGGGCGCCGTTGTGTGGAACGACCATAAGCCAGAGTTC
EST: gi|6548003|gb|AV393787.1|AV393787
EST:     TTGGTGCCGTGATGGGCTTCGCGCTG                         GTGTGGGGCGGCAAGGGCGCCGTTGTGTGGAACGACCATAAGCCAGAGTTC
genomic: TTGGTGCCGTGATGGGCTTCGCGCTGgtgagtgcgt ... ggcgcaacagGTGTGGGGCGGCAAGGGCGCCGTTGTGTGGAACGACCATAAGCCAGAGTTC