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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTTGGCCACTTCTCGCCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcaggcgggcactggcgacacggttagccgtggcgggcggttgactgggtcattggtcagtggggttttagcttcagctgcatcgtttcttacc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98981
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161800986|gb|FC084128.1|FC084128
EST:     GGATGCTACCGCATCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATTGCCACGCAAGCCACCACCAT
genomic: GGATGCCACCGC-TCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|161808568|gb|FC094884.1|FC094884
EST:     CCCAACTCGGAGGATGCTACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATTGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|8514103|gb|BE121998.1|BE121998
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|6546929|gb|AV392713.1|AV392713
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|14242417|gb|BG861233.1|BG861233
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|14237056|gb|BG855872.1|BG855872
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|161797931|gb|FC087420.1|FC087420
EST:     CCCAACTCGGAGGATGCTACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATTGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|10794296|gb|AV631662.1|AV631662
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCA
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCA
EST: gi|14238089|gb|BG856905.1|BG856905
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|15370986|gb|BI530412.1|BI530412
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|22053864|gb|BQ811001.1|BQ811001
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|10780917|gb|AV637597.1|AV637597
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTCGTCAAGAT                         CGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCA
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCA
EST: gi|14240342|gb|BG859158.1|BG859158
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|15369196|gb|BI528622.1|BI528622
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|10787302|gb|AV643974.1|AV643974
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|22076196|gb|BQ824972.1|BQ824972
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|14242051|gb|BG860867.1|BG860867
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|10791112|gb|AV628478.1|AV628478
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|16431135|gb|BI996361.1|BI996361
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|15370984|gb|BI530410.1|BI530410
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|22071303|gb|BQ820641.1|BQ820641
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|10773522|gb|AV624345.1|AV624345
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|161795972|gb|FC085317.1|FC085317
EST:     CCCAACTCGGAGGATGCTACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATTGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|6544166|gb|AV389950.1|AV389950
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|10790999|gb|AV628365.1|AV628365
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|10784987|gb|AV641659.1|AV641659
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|7687062|gb|AW757710.1|AW757710
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|10779996|gb|AV636676.1|AV636676
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|14240161|gb|BG858977.1|BG858977
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|15367764|gb|BI527190.1|BI527190
EST:     CCCAACTCGGGGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|6545280|gb|AV391064.1|AV391064
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|6545353|gb|AV391137.1|AV391137
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|22071304|gb|BQ820642.1|BQ820642
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|14240115|gb|BG858931.1|BG858931
EST:     CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
EST: gi|49464156|gb|BP092069.1|BP092069
EST:     CTCTGAAGAACGGCGATGTTGTCAAGAT                         TGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT
genomic: CTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcag ... cgccacgcagTGACATGGGCTGCCACATTGACGGCTTCATCGCCACGCAAGCCACCACCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTGTTGGCCACTTCTCGCCCAACTCGGAGGATGCCACCGCTCTGAAGAACGGCGATGTTGTCAAGATgtgagttcaggcgggcactggcgacacggttagccgtggcgggcggttgactgggtcattggtcagtggggttttagcttcagctgcatcgtttcttacc

- - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtttct