Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACCTCGCGCGCGGCCCAGCTCTACCGTGCCCTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcagcatggggctcgcgtcattgcgtgtgtgcacaagtcatgcccaggtcttgagctgttcgctagcatacggtattgcagacatgggaaaggc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98081
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23366005|gb|BU653825.1|BU653825
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: gi|15369548|gb|BI528974.1|BI528974
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTTGGCGG
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCT-GGCGG
EST: gi|16072701|gb|BI874697.1|BI874697
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACCCTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: gi|14229761|gb|BG848577.1|BG848577
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: gi|14229760|gb|BG848576.1|BG848576
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCA--ACA-                         CAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGACGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: gi|23363043|gb|BU650863.1|BU650863
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: gi|14237609|gb|BG856425.1|BG856425
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: gi|23362874|gb|BU650694.1|BU650694
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACCCTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: gi|22073645|gb|BQ822983.1|BQ822983
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
EST: gi|22073669|gb|BQ823007.1|BQ823007
EST:     CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAG                         C--C-TGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA
genomic: CTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcag ... cacctccaagCAGCCTGTCGGGCCACGAGAAGGAGCGCTCGGACCACGGCGACCTGGCGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACACCTCGCGCGCGGCCCAGCTCTACCGTGCCCTGCTGGAGAAGGAGGCAGCTAAGGCCACGGTGCAGACACTGCAGCACAGgtgtgggcagcatggggctcgcgtcattgcgtgtgtgcacaagtcatgcccaggtcttgagctgttcgctagcatacggtattgcagacatgggaaaggc

- - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagacat