1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaacgcggcgcccgcgtttggcggacgtgaagcagcatgtgtgctgtcgcgcgcatgggtacgagatgactggacccattggagcacgggtac...
species | Chlamydomonas reinhardtii |
transcript | EDO98046 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGCCAGCAGCCTGGACTACACCACCTTCCGNCTGTGCGGCTTCCACCAG GCCGTGATTGGCAACTATGEST: gi|14240632|gb|BG859448.1|BG859448
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATG
EST: AGGCCAGCAGCCTGGACTACACCACCTTCCGNCTGTGCGGCTTCCACCAG GCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTEST: gi|22059343|gb|BQ813385.1|BQ813385
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGT
EST: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG GCCGTGATTGGCAACTATGEST: gi|15368961|gb|BI528387.1|BI528387
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATG
EST: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG GCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGGEST: gi|14238251|gb|BG857067.1|BG857067
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
EST: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG GCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAAGAGCGGTCCGTGTGGEST: gi|161817773|gb|FC100010.1|FC100010
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
EST: AGGCGAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG GCCGTGATCGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGGEST: gi|161817687|gb|FC099976.1|FC099976
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
EST: AGGCGAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG GCCGTGATCGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaacgcggcgcccgcgtttggcggacgtgaagcagcatgtgtgctgtcgcgcgcatgggtacgagatgactggacccattggagcacgggtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgactg