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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaacgcggcgcccgcgtttggcggacgtgaagcagcatgtgtgctgtcgcgcgcatgggtacgagatgactggacccattggagcacgggtac...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98046
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14237765|gb|BG856581.1|BG856581
EST:     AGGCCAGCAGCCTGGACTACACCACCTTCCGNCTGTGCGGCTTCCACCAG                         GCCGTGATTGGCAACTATG
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATG
EST: gi|14240632|gb|BG859448.1|BG859448
EST:     AGGCCAGCAGCCTGGACTACACCACCTTCCGNCTGTGCGGCTTCCACCAG                         GCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGT
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGT
EST: gi|22059343|gb|BQ813385.1|BQ813385
EST:     AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG                         GCCGTGATTGGCAACTATG
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATG
EST: gi|15368961|gb|BI528387.1|BI528387
EST:     AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG                         GCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
EST: gi|14238251|gb|BG857067.1|BG857067
EST:     AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG                         GCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAAGAGCGGTCCGTGTGG
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
EST: gi|161817773|gb|FC100010.1|FC100010
EST:     AGGCGAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG                         GCCGTGATCGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
EST: gi|161817687|gb|FC099976.1|FC099976
EST:     AGGCGAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAG                         GCCGTGATCGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG
genomic: AGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaa ... tccttgccagGCCGTGATTGGCAACTATGCGGTGCCCATCCTGGAGGAGCGGTCCGTGTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCCGCTGATGAACATCAAAAGTTGCACCGAGAAGTTCCTGGAGGCCAGCAGCCTGGACTACACCACCTTCCGCCTGTGCGGCTTCCACCAGgtgtgtgaaacgcggcgcccgcgtttggcggacgtgaagcagcatgtgtgctgtcgcgcgcatgggtacgagatgactggacccattggagcacgggtac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgactg