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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGGAGAAGCAGGCCATTGCGCACGAGGCGGCACTGGTCGCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatttcgggcgaggcgttaaggttgatttaggtcggtgccttggacctgctgcagttgggcgtgatgtttggtagttcctgcttggcctccact...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98045
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14231622|gb|BG850438.1|BG850438
EST:     CGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCCGCATCAAA                         GCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCG
genomic: CGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGT-CGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCG
EST: gi|161810237|gb|FC099328.1|FC099328
EST:     GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAA                         GCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
genomic: GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
EST: gi|9460288|gb|BE453157.1|BE453157
EST:     GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAA                         GCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
genomic: GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
EST: gi|49464680|gb|BP092593.1|BP092593
EST:     GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAA                         GCTGGAGGCGGCAATCGTACAGGAGGCGG
genomic: GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGG
EST: gi|161821107|gb|FC110039.1|FC110039
EST:     GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAA                         GCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
genomic: GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
EST: gi|161805213|gb|FC092557.1|FC092557
EST:     GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAA                         GCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
genomic: GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
EST: gi|14231623|gb|BG850439.1|BG850439
EST:     GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAA                         GCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
genomic: GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
EST: gi|15704677|gb|BI728982.1|BI728982
EST:     GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAA                         GCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
genomic: GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
EST: gi|15693145|gb|BI717450.1|BI717450
EST:     GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAA                         GCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG
genomic: GCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatt ... cccaatacagGCTGGAGGCGGCAATCGTAAAGGAGGCGGAGGCTCTGCGCAACCCGGGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCTGGAGAAGCAGGCCATTGCGCACGAGGCGGCACTGGTCGCGTTCGACCGCCGCAACCATCTGGGTGTTAGCGAGGGCGTCGCATCAAAgtaagggatttcgggcgaggcgttaaggttgatttaggtcggtgccttggacctgctgcagttgggcgtgatgtttggtagttcctgcttggcctccact

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