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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagatagaggagagagcgcgcgagagagggccgcggctgcagctggtgtgggccaaggctggcggagacagccagcaggggtcagggggaggggc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97521
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369633|gb|BI529059.1|BI529059
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCC                         GCGGCCCCTTCTTCA-CCTGTT
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTT
EST: gi|161819180|gb|FC109867.1|FC109867
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161806371|gb|FC088996.1|FC088996
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161812526|gb|FC099421.1|FC099421
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161814252|gb|FC102057.1|FC102057
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|16071827|gb|BI873823.1|BI873823
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161792543|gb|FC081797.1|FC081797
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTTCTTCA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTT-CTTCA
EST: gi|161803217|gb|FC093236.1|FC093236
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|7615600|gb|AW721040.1|AW721040
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCA-CCTGTTCAAC-TGNGCAAGACCGAAGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161816281|gb|FC102117.1|FC102117
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|9210231|gb|BE337146.1|BE337146
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161818086|gb|FC102260.1|FC102260
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|6541678|gb|AV387462.1|AV387462
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|9458422|gb|BE452232.1|BE452232
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161792947|gb|FC081265.1|FC081265
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|7593234|gb|AW707373.1|AW707373
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|14234425|gb|BG853241.1|BG853241
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|22070078|gb|BQ819511.1|BQ819511
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCT
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCT
EST: gi|161799673|gb|FC085207.1|FC085207
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161807653|gb|FC099806.1|FC099806
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161797639|gb|FC083696.1|FC083696
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161819941|gb|FC107508.1|FC107508
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|6547401|gb|AV393185.1|AV393185
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161792483|gb|FC080411.1|FC080411
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|16071987|gb|BI873983.1|BI873983
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
EST: gi|161813946|gb|FC105586.1|FC105586
EST:     CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCG                         GCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA
genomic: CCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagat ... cgctccgcagGCGGCCCCTTCTTCAACCTGTTCAACCTGGGCAAGACCGAGGCTGCCATGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAGGCGATCTTCAAGGGCTCTGGCGACGCTGCCTACCCCGgtgagcagatagaggagagagcgcgcgagagagggccgcggctgcagctggtgtgggccaaggctggcggagacagccagcaggggtcagggggaggggc

- - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagcca