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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGCCGACAAGGGCCGCTTCTTCGCCTTCGGCCGTGTGTACTCCGGCAAGGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttgctgtagggctggtggcgggtggcgggcagttgcgaggggcgctaacacgcgggcaacagggtgggctatgggctgcaaggaacctggaga...

Basic information

species Chlamydomonas reinhardtii
transcript EDO96511
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49468224|gb|BP096085.1|BP096085
EST:     GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTA
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTA
EST: gi|16073116|gb|BI875112.1|BI875112
EST:     GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: gi|10792927|gb|AV630293.1|AV630293
EST:     GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: gi|10773614|gb|AV624437.1|AV624437
EST:     GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: gi|49468644|gb|BP096505.1|BP096505
EST:     GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: gi|49465221|gb|BP093134.1|BP093134
EST:     CGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: CGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: gi|7615612|gb|AW721052.1|AW721052
EST:     GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: gi|10790749|gb|AV628115.1|AV628115
EST:     GCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: GCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: gi|10785256|gb|AV641928.1|AV641928
EST:     GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: GGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
EST: gi|49466239|gb|BP094152.1|BP094152
EST:     CGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCG                         GCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA
genomic: CGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttg ... ccctcctcagGCGAGAAGAAGGACCTGTACAACAAGTCGGTGCAGCGCACCGTGCTGTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCGCCGACAAGGGCCGCTTCTTCGCCTTCGGCCGTGTGTACTCCGGCAAGGTGGCCACCGGCGCCAAGGTCCGCATCATGGGCGCCAACTACATCCCCGgtgagggttgctgtagggctggtggcgggtggcgggcagttgcgaggggcgctaacacgcgggcaacagggtgggctatgggctgcaaggaacctggaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgggc