1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCGTGGCTGCCTCTGCTGGGCGAGGGAGCGCCGGCAGTACCGCTCATAATAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCGgtgagtcgggcttggggcggcgccgtgcacgggtgcaacagtgcctcccgagtcccggtcttcaaatagcgtgtatgcgccggcgtgttgtggccgcggt...
species | Chlamydomonas reinhardtii |
transcript | EDP09973 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCG GTGCTGGACGCGCCGGAGGAGTACAAGCAGCGGCACCCGGTGCTGGTGTCGEST: gi|10768338|gb|AV619163.1|AV619163
genomic: TAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCGgtgagtcggg ... ggccacgcagGTGCTGGACGCGCCGGAGGAGTACAAGCAGCGGCACCCGGTGCTGGTGTCG
EST: TAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCG GTGCTGGACGCGCCEST: gi|16071631|gb|BI873627.1|BI873627
genomic: TAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCGgtgagtcggg ... ggccacgcagGTGCTGGACGCGCC
EST: TAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCG GTGCTGGACGCGCCGGAGGAGTACAAGCAGCGGCACCCGGTGCTGGTGTCGEST: gi|16429018|gb|BI994244.1|BI994244
genomic: TAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCGgtgagtcggg ... ggccacgcagGTGCTGGACGCGCCGGAGGAGTACAAGCAGCGGCACCCGGTGCTGGTGTCG
EST: TAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCG GTGCTGGACGCGCCGGAGGAGTACAAGCAGCGGCACCCGGTGCTGGTGTCG
genomic: TAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCGgtgagtcggg ... ggccacgcagGTGCTGGACGCGCCGGAGGAGTACAAGCAGCGGCACCCGGTGCTGGTGTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGTGGCTGCCTCTGCTGGGCGAGGGAGCGCCGGCAGTACCGCTCATAATAGTGACCCTGCGGCGGTCGGGGGAGGAGCTGCTAGGGGCAACTGCGGCGgtgagtcgggcttggggcggcgccgtgcacgggtgcaacagtgcctcccgagtcccggtcttcaaatagcgtgtatgcgccggcgtgttgtggccgcggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg