1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGCGGAGTCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAGgtgtgtcagcggcagcagcagcagcagttcactgttgagtgtccttgggaggtgccagaagttgagaatgatgctggagttgcacggtgtagccatatag...
species | Chlamydomonas reinhardtii |
transcript | EDP09706 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGGCGGAGACCGGNGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAG GTGGGGCATNGGTGGTGGTGTGCCCCATCCTGGAGCGGGACGCCGCACACAEST: gi|16071500|gb|BI873496.1|BI873496
genomic: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAGgtgtgtcagc ... ctgtacgcagGTGGGGCAT-GGTGGTGGTGTGCCCCATCCTGGAGCGGGACGCCGCACACA
EST: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAG GTGGGGCATGGTGGTGGTGTGCCCCATCCTGGAGCGGGACGCCGCACACAAEST: gi|22070532|gb|BQ819865.1|BQ819865
genomic: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAGgtgtgtcagc ... ctgtacgcagGTGGGGCATGGTGGTGGTGTGCCCCATCCTGGAGCGGGACGCCGCACACAA
EST: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAG GTGGGGCATGGTGGTGEST: gi|22070531|gb|BQ819864.1|BQ819864
genomic: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAGgtgtgtcagc ... ctgtacgcagGTGGGGCATGGTGGTG
EST: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAG GTGGGGCATGGTGGTGGTGTGCCCCATTCTGGAGCGGGACGCCGGACACAAEST: gi|22076771|gb|BQ825547.1|BQ825547
genomic: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAGgtgtgtcagc ... ctgtacgcagGTGGGGCATGGTGGTGGTGTGCCCCATCCTGGAGCGGGACGCCGCACACAA
EST: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAG GTGGTGCATGGTGGTGGTGTGCCCCATCCTGGAGCGGGACGCCGCACACAA
genomic: TCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAGgtgtgtcagc ... ctgtacgcagGTGGGGCATGGTGGTGGTGTGCCCCATCCTGGAGCGGGACGCCGCACACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCCTTCGCATTTTGCACGCGCGAGAAGGTGTGGTGCGAGTTCGCGGAGTCGGCGGAGACCGGGGAGAGTGTGGCCTTCTGCCAGGCGGCAGCACGCAGgtgtgtcagcggcagcagcagcagcagttcactgttgagtgtccttgggaggtgccagaagttgagaatgatgctggagttgcacggtgtagccatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatata