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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGACGCGCACAAGCACTTTGGCAAGGGCCAGACCGGCGTGGACCTGGAGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgctgcgtcggggatggggcggttggctggcagacaagcgggtttcaggggcctggacaagtcagtggtgtgttgatagcggcgtgctcgcgat...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09663
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14231359|gb|BG850175.1|BG850175
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|10768717|gb|AV619542.1|AV619542
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCCCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAA
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAA
EST: gi|15704210|gb|BI728531.1|BI728531
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|9460795|gb|BE453414.1|BE453414
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|4375799|gb|AI482577.1|AI482577
EST:     GCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: GCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|14238766|gb|BG857582.1|BG857582
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|7413176|gb|AW651930.1|AW651930
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCTTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|23361770|gb|BU649590.1|BU649590
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCCCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAATGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|7413175|gb|AW651929.1|AW651929
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|16436780|gb|BM002000.1|BM002000
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|14238765|gb|BG857581.1|BG857581
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTTTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|14231358|gb|BG850174.1|BG850174
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
EST: gi|22075852|gb|BQ824628.1|BQ824628
EST:     AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTG                         CACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG
genomic: AGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgct ... ttcatcgcagCACGAGTCGTACGGCCCTGCCTATGCCAAGACCATCACCGTGAACGTCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACGACGCGCACAAGCACTTTGGCAAGGGCCAGACCGGCGTGGACCTGGAGCTGGCGCCCGGCAAGCACACACTGACCCTGCAGTTCGCCAACGCTCTGgtgaggtgctgcgtcggggatggggcggttggctggcagacaagcgggtttcaggggcctggacaagtcagtggtgtgttgatagcggcgtgctcgcgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcagtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttg