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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTTCGTGGTCGGTGTGAACGAGGGCGACTACAAGCACGAGTACCCCATCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09609
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP09609 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: LOC_Os04g38600.2 (Oryza sativa), 5'ss of exon 3
CACCTTCGTGGTCGGTGTGAACGAGGGCGACTACAAGCACGAGTACCCCATCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccag
                   || |  | | | ||||  | |||  | |||||||||  ||||||||| ||||||||||||||||| ||||||||||| ||| |     | |  | |   | | | |||     |     | ||||  ||     ||         |    |   | |  | |     |    |     |   |                                                                        
-------------------AATGCCGACCAGTACAGCCCCGACGAGCCCATCATCAGCAACGCCTCCTGCACCACCAACTGCCTCGCCCCCTTCGTGAAGATCCTCGACCAGAAGTTCGgtacgtgcgcacacgcgcgcatcagcgatc--ctcgaccaattttactctctctctctctctctgatgcttaaccaatcaatggcgcag------------------------------------------------------------------

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: Vv14s0068g00680.t01 (Vitis vinifera), 5'ss of exon 4
CACCTTCGTGGTCGGTGTGAACGAGGGCGACTACAAGCACGAGTACCCCATCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagcttacgcatg-ttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccag
                   || |  | ||| ||||| || ||  |  ||||||||  ||| || || ||||| ||||||||||| |||||||||||||||||     | |  | |   | |   ||    |  |  ||||||| |      |    ||      |   | ||       || || | |    |     |  ||                                                                        
-------------------AATGCAGACGAATACAATCATGATGAGTCCATCATCAGCAATGCTTCCTGCACAACCAACTGCCTTGCCCCCTTCGTCAAGGTCCTCGACCAGAAGTTCGgtaattttacatacccctttcgtctgtttgtcaccatggtcttccctccatcgctttgaatgatgggagcttaaaaattcatggcag---------------------------------------------------------------------

upper sequence: EDP09609 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: EFJ13677 (Selaginella moellendorffii), 5'ss of exon 4
CACCTTCGTGGTCGGTGTGAACGAGGGCGACTACAAGCACGAGTACCCCATCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgt-----aaggaagcttacgcatgttgcttgctgtggctttttcgtcaggaataaatgcggggggcggcaagagcgtccacggtgttgcgggtccgagtgccctgggatatcttgtcttgtcagctcacctgtctctgacccggcccttcccctttcccctctcccttgcctaccccag
                   ||||  |   | ||||  | |  | | || ||||||  ||||||||| ||||| || ||||||||||| ||||||||||| ||     | |  |  ||  | | ||| | | |    ||| | ||       ||  ||||  |   |      | | ||||                                                                                                   
-------------------AACGCCGAGCAATACAGTCCCACGGAGCCGATCATCAGCAACGCCTCCTGCACGACGAACTGCCTGGCTCCCTTCGTCAAAGTCCTGGATGAGAAGTTCGgtaagtt-cctccaaaagctctctctc----gatcgatgctagaaactcttgcaacttccag--------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22070074|gb|BQ819509.1|BQ819509
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34993556|gb|CF567473.1|CF567473
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161808102|gb|FC099215.1|FC099215
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|239841890|gb|GR283747.1|GR283747
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34993726|gb|CF567643.1|CF567643
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGGCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCA-GGGCACGATGACCAC-ACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34983153|gb|CF557070.1|CF557070
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161815697|gb|FC101838.1|FC101838
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34989239|gb|CF563156.1|CF563156
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTCCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161803466|gb|FC093069.1|FC093069
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGGCACGATGACCACCACCCA
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGG-CACGATGACCACCACCCA
EST: gi|10775532|gb|AV632212.1|AV632212
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATCGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|34990496|gb|CF564413.1|CF564413
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|49463822|gb|BP091735.1|BP091735
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCAT
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCAT
EST: gi|23366194|gb|BU654014.1|BU654014
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATCGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|10776815|gb|AV633495.1|AV633495
EST:     GCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATCGTCAAGGGCACGATGACCACCACCCAC
genomic: GCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|10782423|gb|AV639103.1|AV639103
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTCCGGCAT
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCAT
EST: gi|10777358|gb|AV634038.1|AV634038
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATCGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|10782487|gb|AV639167.1|AV639167
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAG
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAG
EST: gi|161819056|gb|FC108872.1|FC108872
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|7427490|gb|AW661656.1|AW661656
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161798500|gb|FC083995.1|FC083995
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161823171|gb|FC107469.1|FC107469
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|161807764|gb|FC096498.1|FC096498
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
EST: gi|7687718|gb|AW758364.1|AW758364
EST:     TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAG                         GTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC
genomic: TCATCTCCAACGCCTCGTGCACCACCAACTGCCTGGCCCCCTTCGTCAAGgtaaggaagc ... cctaccccagGTGCTGGAGCAGAAGTTCGGCATTGTCAAGGGCACGATGACCACCACCCAC