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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATTGGCACGTTCAAGACTGCTGAGGAGGCTGCACGGGCGTACGATGAGGCCGCCATTGCGCTGCATGGGCCTCGCGCCAAGgtgagacgcgctcgaatgcacagtttcgcttgtcttgatctgggtcggatgacttgcacgtcgccctgatattgcttgcacccaccgtaactgtgcgatt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09589
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7615301|gb|AW720749.1|AW720749
EST:     CACGGGCGTACGATGAGGCCGCCATTGCGCTGCATGGGCCTCGCGCCAAG                         ACCAACTTCACCTACCCCTGCCAGCAGCAGAGCGCCGCCGCCGCGCCAGCC
genomic: CACGGGCGTACGATGAGGCCGCCATTGCGCTGCATGGGCCTCGCGCCAAGgtgagacgcg ... ccctttgcagACCAACTTCACCTACCCCTGCCAGCAGCAGAGCGCCGCCGCCGCGCCAGCC
EST: gi|22065350|gb|BQ816321.1|BQ816321
EST:     CACGGGCGTACGATGAGGCCGCCATTGCGCTGCATGGGCCTCGCGCCAAG                         ACCAACTTCACCTACCCCTGCCAGCAGCAGAGCGCCGCCGCCGCGCCAG
genomic: CACGGGCGTACGATGAGGCCGCCATTGCGCTGCATGGGCCTCGCGCCAAGgtgagacgcg ... ccctttgcagACCAACTTCACCTACCCCTGCCAGCAGCAGAGCGCCGCCGCCGCGCCAG
EST: gi|10126136|gb|BE724840.1|BE724840
EST:     CACGGGCGTACGATGAGGCCGNCATTGCGCTGCATGGGCCTCGCGCCAAG                         ACCAACTTCACCTACCCCTGCCAGCAGC
genomic: CACGGGCGTACGATGAGGCCGCCATTGCGCTGCATGGGCCTCGCGCCAAGgtgagacgcg ... ccctttgcagACCAACTTCACCTACCCCTGCCAGCAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGATTGGCACGTTCAAGACTGCTGAGGAGGCTGCACGGGCGTACGATGAGGCCGCCATTGCGCTGCATGGGCCTCGCGCCAAGgtgagacgcgctcgaatgcacagtttcgcttgtcttgatctgggtcggatgacttgcacgtcgccctgatattgcttgcacccaccgtaactgtgcgatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taactgt