1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCACATCACGCCAAACTTAGAGCGATTAGAGGGGTCCATCAAGAGCAAGCGGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAGgtgggtttgcctcaagtccacttccgcaacacctgatgagtgcgttgccttttggcattgcatgccttaagccttcagcaatcacacctgcggacccctg...
species | Chlamydomonas reinhardtii |
transcript | EDP09557 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAG GTTAAGGACCTGGAGGCCGAGGCGCGGGCACTCATCCAGAAGTCCCGGCACEST: gi|10774626|gb|AV625449.1|AV625449
genomic: GGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAGgtgggtttgc ... gtgcccacagGTTAAGGACCTGGAGGCCGAGGCGCGGGCACTCATCCAGAAGTCCCGGCAC
EST: GGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAG GTTAAGGACCTGGAGGCCGAGGCGCGGGCACTCATCCAGAAGTCCCGGCACEST: gi|16071551|gb|BI873547.1|BI873547
genomic: GGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAGgtgggtttgc ... gtgcccacagGTTAAGGACCTGGAGGCCGAGGCGCGGGCACTCATCCAGAAGTCCCGGCAC
EST: GGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAG GTTAAGGACCTGGAGGCCGAGGCGCGGGCACTCATCCAGAAGTCCCGGCAC
genomic: GGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAGgtgggtttgc ... gtgcccacagGTTAAGGACCTGGAGGCCGAGGCGCGGGCACTCATCCAGAAGTCCCGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACATCACGCCAAACTTAGAGCGATTAGAGGGGTCCATCAAGAGCAAGCGGGAGCTGCGAGACCAAGTCAAGCAGCAGTGTGATGCCGAGTTCGCCAAGgtgggtttgcctcaagtccacttccgcaacacctgatgagtgcgttgccttttggcattgcatgccttaagccttcagcaatcacacctgcggacccctg
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaca