1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTATGACGCCAAGACCGGTAAAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAGgtgggcggggcggggcggggcggggcgtgactcttgcgacagtagcacccgctggatgcctgcggggccaagtgcttttgtcccggcacagtcaagcctg...
species | Chlamydomonas reinhardtii |
transcript | EDP09268 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAG GTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGACEST: gi|22062960|gb|BQ815021.1|BQ815021
genomic: AAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAGgtgggcgggg ... tcccccgcagGTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGAC
EST: AAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAG GTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGAC
genomic: AAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAGgtgggcgggg ... tcccccgcagGTGGCGTGGCTGGTGCTGCTGCTGATGGGGTGCGGCATCTTCGCGGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATGACGCCAAGACCGGTAAAATCTACCGCATAGTGGTGCTGCTGCTGGGCTTCTCATGGTGGATCCAGgtgggcggggcggggcggggcggggcgtgactcttgcgacagtagcacccgctggatgcctgcggggccaagtgcttttgtcccggcacagtcaagcctg
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttgt