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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTGATCGGCCCGGCGGCGGAGGTGGCCGACAAGGTGGCCGCGCTGGAGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggcacgacaccgccccccgcaaccaccccttgcagcgctctcatgccggcccctcgcgcctctcacctcctccggtctcactcatcaaacctct...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07868
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14234846|gb|BG853662.1|BG853662
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|22069166|gb|BQ818834.1|BQ818834
EST:     GCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: GCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|22051908|gb|BQ809953.1|BQ809953
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|23366568|gb|BU654387.1|BU654387
EST:     GGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: GGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|14241958|gb|BG860774.1|BG860774
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|22053051|gb|BQ810562.1|BQ810562
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|22072652|gb|BQ821990.1|BQ821990
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|22064512|gb|BQ815839.1|BQ815839
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|10773974|gb|AV624797.1|AV624797
EST:     AGGAGCAGCTGGCGGGCATGGATGAATACCTGAGGCAGCACGAGGCCCAG                         GCTCCGCTGTTCGGCGGGCAGC
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGC
EST: gi|22057684|gb|BQ812691.1|BQ812691
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|22053049|gb|BQ810561.1|BQ810561
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|23361689|gb|BU649509.1|BU649509
EST:     GCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: GCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|14237482|gb|BG856298.1|BG856298
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
EST: gi|22069518|gb|BQ819085.1|BQ819085
EST:     AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAG                         GGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG
genomic: AGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggca ... cattccccagGGTCCGCTGTTCGGCGGGCAGCACCTCAACGGCACCGACTGTTCGCTGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATCCTGATCGGCCCGGCGGCGGAGGTGGCCGACAAGGTGGCCGCGCTGGAGGAGCAGCTGGCGGGCATGGATGACTACCTGAGGCAGCACGAGGCCCAGgtgggtggcacgacaccgccccccgcaaccaccccttgcagcgctctcatgccggcccctcgcgcctctcacctcctccggtctcactcatcaaacctct

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacct