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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTGCCTGCTGTCCAGCCAGACGCACTACGAGACGCCGCTGGgtgaggggaggggcggaggggcgcggggggagagttagggagggagagagggaggagggtagggacgtttgcagctgagcctgccgatgtgggtgtgttg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07544
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369275|gb|BI528701.1|BI528701
EST:     ACGCCAGCGGCACTTCATCGGCTTTGCTGCCGGAAAGCCCACGCCGCTGGCCGCGCTGCAGTGCTTTGGCTTCTTCCGGGCTGGCGATATGCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTG
genomic: ACGCCAGCGGCACTTCATCGGCTTTGCTGCCGGAAAGCCCACGCCGCTGGCCGCGCTGCAGTGCTTTGGCTTCTTCCGGGCTGGCGATATGCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTG
EST: gi|23360380|gb|BU648200.1|BU648200
EST:     CAGCCGCAAGTGCCTGCTGTCCAGCCAGACGCACTACGAGACGCCGCTGG                         GCTCCATGGAGATTGACCAGGAGGTGTATGCGCAGCTCAGGGACAGCGGCA
genomic: CAGCCGCAAGTGCCTGCTGTCCAGCCAGACGCACTACGAGACGCCGCTGGgtgaggggag ... ccccccacagGCTCCATGGAGATTGACCAGGAGGTGTATGCGCAGCTCAGGGACAGCGGCA
EST: gi|10769136|gb|AV619961.1|AV619961
EST:     ACGCCAGCGGCACTTCATCGGCTTTGCTGCCGGAAAGCCCACGCCGCTGGCCGCGCTGCAGTGCTTTGGCTTCTTCCGGGCTGGCGATATGCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTG
genomic: ACGCCAGCGGCACTTCATCGGCTTTGCTGCCGGAAAGCCCACGCCGCTGGCCGCGCTGCAGTGCTTTGGCTTCTTCCGGGCTGGCGATATGCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAACGCGTGTTCCTGCTGGGGCCCTCCCACCACGTGTTCAGCCGCAAGTGCCTGCTGTCCAGCCAGACGCACTACGAGACGCCGCTGGgtgaggggaggggcggaggggcgcggggggagagttagggagggagagagggaggagggtagggacgtttgcagctgagcctgccgatgtgggtgtgttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgt