1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAGgtgcggcgcggggcggggcgctgggcagggcggggcggtgtgccgggcagggtgcgggtggctcggccggtgtcgaggtaggcataggtgtaggtgtgca...
species | Chlamydomonas reinhardtii |
transcript | EDP07040 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAG ATGGGCCTGCACGTGTTCTTCGGCTGCTACTTCAACCTTTTCCGCCTGATGEST: gi|10791803|gb|AV629169.1|AV629169
genomic: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAGgtgcggcgcg ... cccggcgcagATGGGCCTGCACGTGTTCTTCGGCTGCTACTTCAACCTTTTCCGCCTGATG
EST: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAG ATGGGCCTGCACGTGTTCTTCGGCTGCTACTTCAACCTTTTCCGCCTGATGEST: gi|15699188|gb|BI723493.1|BI723493
genomic: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAGgtgcggcgcg ... cccggcgcagATGGGCCTGCACGTGTTCTTCGGCTGCTACTTCAACCTTTTCCGCCTGATG
EST: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAG ATGGGCCTGCACGTGTTCTTCGGCTGCTACTTCAACCTTTTCCGCCTGATGEST: gi|49467273|gb|BP095186.1|BP095186
genomic: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAGgtgcggcgcg ... cccggcgcagATGGGCCTGCACGTGTTCTTCGGCTGCTACTTCAACCTTTTCCGCCTGATG
EST: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAG ATGGGCCTGCACGTGTTEST: gi|15699186|gb|BI723491.1|BI723491
genomic: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAGgtgcggcgcg ... cccggcgcagATGGGCCTGCACGTGTT
EST: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAG ATGGGCCTGCACGTGTTCTTCGGCTGCTACTTCAACCTTTTCCGCCTGATG
genomic: TTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAGgtgcggcgcg ... cccggcgcagATGGGCCTGCACGTGTTCTTCGGCTGCTACTTCAACCTTTTCCGCCTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGAGGTGGACATCTACGAGGGCCGCCAGTGGATTGGTGGTAAGGTGGCCTCCTTCGTGGACAAGGACGGCAACCACATTGAGgtgcggcgcggggcggggcgctgggcagggcggggcggtgtgccgggcagggtgcgggtggctcggccggtgtcgaggtaggcataggtgtaggtgtgca
- - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taggtgt