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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCGgtgcgtggcgggatgttggggactacaagcaacatgttgctgttgggcggggacgaagggggcgggcgcatgctacatgctgttggggcttgcttggcagggcagcggcacgtgccacccatcagtgtgctaacggccgctttgttatctggctgaacctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06387
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP06387 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: LOC_Os01g59730.1 (Oryza sativa), 5'ss of exon 4
ACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCGgtgcgtggcgggatgttggggactacaagcaacatgttgctgttgggcggggacgaagggggcgggcgcatgctacatgctgttggggcttgcttggcagggcagcggcacgtgccacccatcagtgtgctaacggccgctttgttatctggctgaacctgcag
|||| ||||| || |||||||||||||||||||||||||| ||  ||   ||     ||  ||| || |||  ||  | |    ||      |  || |      || ||   |       | |||     |     | | ||   |    || |      |    ||     ||  | | ||  | |||                                           
ACAATGTTGATCTTGGCACTGCCTGCGGCAAGTACTACCGAGTGTGCTGTCTCAGTGTCGTCGATCCTGgttagtttcagtgacttcaatctttgaacct-----ttccttccgcatccatatgaactctccatttccgttctttttttcatttgaaaacac----caataatgcttctcttgtaatccag------------------------------------------

upper sequence: EDP06387 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: GRMZM2G044137_T01 (Zea mays), 5'ss of exon 4
ACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCGgtgcgtggcgggatgttggggactacaagcaacatgttgctgttgggcggggacgaagggggcgggcgcatgctacatgctgttggggcttgcttggcagggcagcggcacgtgccacccatcagtgtgctaacggccgctttgttatctggctgaacctgcag
|||| ||||| || |||||||||||||||||||||||| | ||  ||   ||    |||| |||||| ||| |||  |    |||||   | | | |  | | |||| ||||          ||||  |     || ||      | || ||    ||    ||   ||| |  |     ||  |                                                
ACAATGTTGATCTTGGCACTGCCTGCGGCAAGTACTACAGGGTGTGCTGCCTCAGTATCATCGACCCAGgttcgttcc----tgttga--attgccattatcttgtttctgtc---------cgaactgtcactgcacaattcttaggccgtcactgcacaattcttaggcc--ctatttgtttcg-----------------------------------------------

upper sequence: EDP06387 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: GRMZM2G123969_T01 (Zea mays), 5'ss of exon 3
ACAACGTTGACCTGGGCACTGCCTGCGGCAAGTACTACCGCGTCAGCGTGCTGGCCATCACCGACCCCGgtgcgtggcgggatgttggggactacaagcaacatgttgctgttggg----cggggacgaagggggcgggcgcatgctacatg-ctgttggggcttgcttggcagggcagcggcacgtgccacccatcagtgtgctaacggccgctttgttatctggctgaacctgcag
|||| ||||| || |||||||||||||||||||||||| | ||  ||   ||    |||| |||||| ||| |||  |    |||||   | | | |  | | |||| || |  |           |  |       |||     || ||    | || || | |  |||    |                                                               
ACAATGTTGATCTTGGCACTGCCTGCGGCAAGTACTACAGGGTGTGCTGCCTCAGTATCATCGACCCAGgttcgttcc----tgttga--attgccattatcttgtttctctccgcactctcactgcacaattcttaggccgtcactgcacaattcttaggccctatttgtttcg---------------------------------------------------------------