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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCTGCGCACCGACAAGGGCGCCATCAAGTTCGTGCTGTCGGGCGCCAACATCATGTGCCCCGGCCTCACGCACCCGGACGCGGTCATTCACGACGAGgtgggcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn...

Basic information

species Chlamydomonas reinhardtii
transcript EDP06185
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14240847|gb|BG859663.1|BG859663
EST:     ACATCATGTGCCCCGGCCTCACGCACCCGGACGCGGTCATTCACGACGAG                         GGCGAGGTGGGCGCGCCGGTGGCGATCTACGCGTTTGAGAAGGAGCACGCC
genomic: ACATCATGTGCCCCGGCCTCACGCACCCGGACGCGGTCATTCACGACGAGgtgggcagnn ... gctgctgcagGGCGAGGTGGGCGCGCCGGTGGCGATCTACGCGTTTGAGAAGGAGCACGCC
EST: gi|15697896|gb|BI722201.1|BI722201
EST:     ACATCATGTGCCCCGGCCTCACGCACCCGGACGCGGTCATTCACGACGAG                         GGCGAGGTGGGCGCGCCGGTGGCGATCTACGCGTTTGAGAAGGAGCACGCC
genomic: ACATCATGTGCCCCGGCCTCACGCACCCGGACGCGGTCATTCACGACGAGgtgggcagnn ... gctgctgcagGGCGAGGTGGGCGCGCCGGTGGCGATCTACGCGTTTGAGAAGGAGCACGCC
EST: gi|15692184|gb|BI716489.1|BI716489
EST:     ACATCATGTGCCCCGGCCTCACGCACCCGGACGCGGTCATTCACGACGAG                         GGCGAGGTGGGCGCGCCGGTGGCGATCTACGCGTTTGAGAAGGAGCACGCC
genomic: ACATCATGTGCCCCGGCCTCACGCACCCGGACGCGGTCATTCACGACGAGgtgggcagnn ... gctgctgcagGGCGAGGTGGGCGCGCCGGTGGCGATCTACGCGTTTGAGAAGGAGCACGCC