1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGTGTACGCGGACATGAGCACCACCTGCAAGGAGTACTACGACACGGAGAAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtgtgcgggttcgggtgggggtgggggtgggggtgggcgcgggaatggcggtggctgtggtgggaggggctggcccgcacggcgcacggacgt...
species | Chlamydomonas reinhardtii |
transcript | EDP05305 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCG CTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTTEST: gi|10777029|gb|AV633709.1|AV633709
genomic: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtg ... cgcctcgcagCTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTT
EST: AGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTTGGATCGGCCG CTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGEST: gi|9441502|gb|BE441992.1|BE441992
genomic: AGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACT-GGATCGGCCGgtgggtggtg ... cgcctcgcagCTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTG
EST: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCG CTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTTEST: gi|161791346|gb|FC081245.1|FC081245
genomic: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtg ... cgcctcgcagCTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTT
EST: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCG CTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTTEST: gi|16436610|gb|BM001830.1|BM001830
genomic: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtg ... cgcctcgcagCTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTT
EST: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCG CTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTTEST: gi|161812516|gb|FC098592.1|FC098592
genomic: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtg ... cgcctcgcagCTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTT
EST: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCG CTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTTEST: gi|15704059|gb|BI728364.1|BI728364
genomic: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtg ... cgcctcgcagCTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTT
EST: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCG CTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTTEST: gi|161804116|gb|FC092159.1|FC092159
genomic: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtg ... cgcctcgcagCTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTT
EST: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCG CTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTT
genomic: AAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtg ... cgcctcgcagCTCGGATGAGGACATCATCGCCGCCACCATGACTGAGCTGGAGCGCCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGTACGCGGACATGAGCACCACCTGCAAGGAGTACTACGACACGGAGAAGTCCATGCTGGAGCTCGTGTTCGCGCCCGCCAAGGACTGGATCGGCCGgtgggtggtgtgcgggttcgggtgggggtgggggtgggggtgggcgcgggaatggcggtggctgtggtgggaggggctggcccgcacggcgcacggacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt