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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgactgtgtgctagccctggcgtggggtgcggtcgggtttgcgatagcgcacggcatgcgtcgcgccttggagacggaaggcaggactcagcagc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP03982
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10788056|gb|AV644728.1|AV644728
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|49465644|gb|BP093557.1|BP093557
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|10782915|gb|AV639587.1|AV639587
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|10786054|gb|AV642726.1|AV642726
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|49467062|gb|BP094975.1|BP094975
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|6552100|gb|AV397884.1|AV397884
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|22051882|gb|BQ809934.1|BQ809934
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|6547392|gb|AV393176.1|AV393176
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|49465381|gb|BP093294.1|BP093294
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|6546630|gb|AV392414.1|AV392414
EST:     CTGGTGTGGACAAGCTGGCCACCGGGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|49460469|gb|BP088382.1|BP088382
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|15702828|gb|BI727133.1|BI727133
EST:     CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: CTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
EST: gi|16072229|gb|BI874225.1|BI874225
EST:     GGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAG                         GGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC
genomic: GGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgact ... gccccgacagGGTCGCAACGTGGTGTTGGAGTCCAAGTTCGGCTCGCCCAAGATTGTGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGTGTGGACAAGCTGGCCACCGTGGTCGGTGTGACCATCGGCCCCAAGgtgcgcgactgtgtgctagccctggcgtggggtgcggtcgggtttgcgatagcgcacggcatgcgtcgcgccttggagacggaaggcaggactcagcagc

- - - - -  CAAGCT
- - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcgt