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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACACGGAGCGCATCGGCATCAGCCGGGACGAGTTCAAGGCGCTGCTGGACGAGGAGGAGCTGCGGGACAGCCTCATCCTGGTGTTCGCAAACAAGCAGgtgggcagggggcgggggtccagcggggccagcgggaggaggagcggggcggtgacagggcgggggcgtgggcgtgggcagggcgaggccagagcgggct...

Basic information

species Chlamydomonas reinhardtii
transcript EDP03455
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10791151|gb|AV628517.1|AV628517
EST:     ACGAGGAGGAGCTGCGGGACAGCCTCATCCTGGTGTTCGCAAACAAGCAG                         GACCTGCCCAACGCGCTGAGCGACGCGCAGATTGCGGAGGGGTTAGGGCT
genomic: ACGAGGAGGAGCTGCGGGACAGCCTCATCCTGGTGTTCGCAAACAAGCAGgtgggcaggg ... cgccgcgcagGACCTGCCCAACGCGCTGAGCGACGCGCAGATTGCGGAGGGGTTAGGGCT
EST: gi|9210221|gb|BE337136.1|BE337136
EST:     ACGAGGAGGAGCTGCGGGACAGCCTCATCCTGGTGTTCGCAAACAAGCAG                         GACCTGCCCAACGCGCTGAGCGACGCGCAGATTGCGGAGGGGTTAGGGCTG
genomic: ACGAGGAGGAGCTGCGGGACAGCCTCATCCTGGTGTTCGCAAACAAGCAGgtgggcaggg ... cgccgcgcagGACCTGCCCAACGCGCTGAGCGACGCGCAGATTGCGGAGGGGTTAGGGCTG
EST: gi|15698798|gb|BI723103.1|BI723103
EST:     ACGAGGAGGAGCTGCGGGACAGCCTCATTCTGGTGGTCGCAAACAAGCAG                         GACCTGCCCAACGCGCTGAGCGACCCGCAGAT
genomic: ACGAGGAGGAGCTGCGGGACAGCCTCATCCTGGTGTTCGCAAACAAGCAGgtgggcaggg ... cgccgcgcagGACCTGCCCAACGCGCTGAGCGACGCGCAGAT
EST: gi|161800655|gb|FC085903.1|FC085903
EST:     ACGAGGAGGAGCTGCGGGACAGCCTCATCCTAGTGTTCGCAAACAAGCAG                         GACCTGCCCAACGCGCTGAGCGACGCGCAGATTGCGGAGGGGTTAGGGCTG
genomic: ACGAGGAGGAGCTGCGGGACAGCCTCATCCTGGTGTTCGCAAACAAGCAGgtgggcaggg ... cgccgcgcagGACCTGCCCAACGCGCTGAGCGACGCGCAGATTGCGGAGGGGTTAGGGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACACGGAGCGCATCGGCATCAGCCGGGACGAGTTCAAGGCGCTGCTGGACGAGGAGGAGCTGCGGGACAGCCTCATCCTGGTGTTCGCAAACAAGCAGgtgggcagggggcgggggtccagcggggccagcgggaggaggagcggggcggtgacagggcgggggcgtgggcgtgggcagggcgaggccagagcgggct

- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggcgt