Sequence
atgc intronic sequence ATGC exonic sequenceCGTACAACGCCATCCGCATCTTCATTGCCGGTTACGTGTGGATGACGGGATTCGGCAACTTTTCTTACTACTACAAAACCGGGGACTTCTGCATTGGCCGgtgagcgctggcgtggcggcgagaacccgcgtcagcggtggcggagaaagcgtggagcccggaaccgtggatatgggcctggggggagctgaatcgcaaa...
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP02440 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDP02440 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: PP1S357_34V6.1 (Physcomitrella patens), 5'ss of exon 7
CGTACAACGCCATCCGCATCTTCATTGCCGGTTACGTGTGGATGACGGGATTCGGCAACTTTTCTTACTACTACAAAACCGGGGACTTCTGCATTGGCCGgtgagcgctggcgtg-----gcggcgagaacccgcgtcagcggtggcggagaaagcgtgg-----------agcccggaaccgtggatatgggcctggggggagctgaatcgcaaa-------------------------------------------------------
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----------CATTCGAGTTTTTATTGCTGCCTACGTTTGGATGACGGGGTTTGGCAACTTTTCTTACTATTACATTCGCAAAGACTTTAGCTTGGGCCGTTTTGCACAGgtatgtatgagcgtcttgaatatg-attagtggcggtaattttggtgcgggttgcactgttagcctgttttcggaactacgaattcaagtgttcatgtacctccagttaatgtttttcaaaaatcgaaggggtaccttaatagtgcttgatgatgtgacag
upper sequence: EDP02440 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: PP1S5_239V6.1 (Physcomitrella patens), 5'ss of exon 7
CGTACAACGCCATCCGCATCTTCATTGCCGGTTACGTGTGGATGACGGGATTCGGCAACTTTTCTTACTACTACAAAACCGGGGACTTCTGCATTGGCCGgtgagcgctggcgtggcggcgagaacccg-cgtcagcggtggcggaga--aagcgtggagcccggaaccgtggatatgggcctggggggagctgaatcgcaaa--------
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----------CATTCGGGTGTTCATTGCTGCTTACGTCTGGATGACGGGTTTCGGCAACTTTTCCTACTATTATATTCGGAAGGATTTTAGCTTGGGCCGTTTTGCACAGgt-tggttgagtgaacttgacatctatattggtaggaaccatgcctggaacaaggcaaaacaactacccaaagtgggtattctctttgccttgtttcagtcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16434370|gb|BI999596.1|BI999596EST: TTCGGCAACTTTTCTTACTACTACAAAACCGGGGACTTCTGCATTGGCCG ATTCGCGCAGATGATGTGGCGCCTCAACTTCATGGTGTTCTTCACGTGCGT
genomic: TTCGGCAACTTTTCTTACTACTACAAAACCGGGGACTTCTGCATTGGCCGgtgagcgctg ... gttccctcagATTCGCGCAGATGATGTGGCGCCTCAACTTCATGGTGTTCTTCACGTGCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTACAACGCCATCCGCATCTTCATTGCCGGTTACGTGTGGATGACGGGATTCGGCAACTTTTCTTACTACTACAAAACCGGGGACTTCTGCATTGGCCGgtgagcgctggcgtggcggcgagaacccgcgtcagcggtggcggagaaagcgtggagcccggaaccgtggatatgggcctggggggagctgaatcgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatat