1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAGGAGCTGCTGGTGTACGGCCTGAAGGGTGTGTGCGCCTATGCCCACCACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAGgtgcgtgggtgcgagcgccccaggaatgcgcgctctgcatgaaacacgaaatggcacctggaacaaagtaaaaatgggcgggtgactgcgtgtacgaaaggtccggttgctgcttggtccgtgtctttgactgacccaatcctcccgcatcctctatgccggttcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP02255 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAG GGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTTEST: gi|6542620|gb|AV388404.1|AV388404
genomic: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAGgtgcgtgggt ... cggttcgcagGGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTT
EST: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAG GGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTTEST: gi|161815479|gb|FC104844.1|FC104844
genomic: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAGgtgcgtgggt ... cggttcgcagGGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTT
EST: ACGCGGAGGCCCTGGGTTTCACCGACCCCACTGTGTACGCCGAGATCCAG GGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTTEST: gi|15700362|gb|BI724667.1|BI724667
genomic: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAGgtgcgtgggt ... cggttcgcagGGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTT
EST: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAG GGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTTEST: gi|14238410|gb|BG857226.1|BG857226
genomic: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAGgtgcgtgggt ... cggttcgcagGGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTT
EST: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAG GGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTT
genomic: ACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAGgtgcgtgggt ... cggttcgcagGGGGCGCTGCACTTCCTGAACACGCCCGGCGCCAAGGACGTGGGCCAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGAGCTGCTGGTGTACGGCCTGAAGGGTGTGTGCGCCTATGCCCACCACGCGGAGGCCCTGGGTTTCACCGACCCCACCGTGTACGCCGAGATCCAGgtgcgtgggtgcgagcgccccaggaatgcgcgctctgcatgaaacacgaaatggcacctggaacaaagtaaaaatgggcgggtgactgcgtgtacgaaaggtccggttgctgcttggtccgtgtctttgactgacccaatcctcccgcatcctctatgccggttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC