1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACGCCATCCTCAATCCGGCCTTCCATACCCTATCCGTGGTCATCACGGCGCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATGgtacgttgtacagagggcaacgggcgctggatgcaaaatacctgcacttgattgcttgggagatgaagagagagagagactcgggtccggctccgctttatgtttgtcgtcgatggacagaattcagacggcagaacgggatgtgtgcatgacatattgacacgccgtatccccgcag
species | Chlamydomonas reinhardtii |
transcript | EDP02234 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATG TGCTGGGCAAGTACGAGGGCGACCAGGACGTGGTCGCCAAGCTCTTCAACGEST: gi|49467805|gb|BP095666.1|BP095666
genomic: GCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATGgtacgttgta ... atccccgcagTGCTGGGCAAGTACGAGGGCGACCAGGACGTGGTCGCCAAGCTCTTCAACG
EST: GCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATG TGCTGGGCAAGTACGAGGGCGACCAGGACGTGGTCGCCAAGCTCTTCAACGEST: gi|49470079|gb|BP097940.1|BP097940
genomic: GCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATGgtacgttgta ... atccccgcagTGCTGGGCAAGTACGAGGGCGACCAGGACGTGGTCGCCAAGCTCTTCAACG
EST: GCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATG TGCTGGGCAAGTACGAGGGCGACCAGGACGTGGTCGCCAAGCTCTTCAACGEST: gi|6550259|gb|AV396043.1|AV396043
genomic: GCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATGgtacgttgta ... atccccgcagTGCTGGGCAAGTACGAGGGCGACCAGGACGTGGTCGCCAAGCTCTTCAACG
EST: GCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATG TGCTGGGCAAGTACGAGGGCGACCAGGACGTGGTCGCCAAGCTCTTCAACG
genomic: GCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATGgtacgttgta ... atccccgcagTGCTGGGCAAGTACGAGGGCGACCAGGACGTGGTCGCCAAGCTCTTCAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACGCCATCCTCAATCCGGCCTTCCATACCCTATCCGTGGTCATCACGGCGCTCTCGGGGAAGAATGCCACTATCGACCCCAACGTGCTGCGCATCTATGgtacgttgtacagagggcaacgggcgctggatgcaaaatacctgcacttgattgcttgggagatgaagagagagagagactcgggtccggctccgctttatgtttgtcgtcgatggacagaattcagacggcagaacgggatgtgtgcatgacatattgacacgccgtatccccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC