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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgcagggcgcagcggcgaggggcgtgggttgtgtgcagaatggcaggccagggtcagccgcaagctagcatcgtcgtgtttagtcccagaacgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP02064
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP02064 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: GRMZM2G026470_T01 (Zea mays), 5'ss of exon 6
GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgcagggcgcagcggcgaggggcgtgggttgtgtgcagaatggc-aggccagggtcagccgcaagctagcatcgtcgtgtttagtcccagaacgt-------------------
              |||||||||||||| |||||||||||| |||  |||||||||||   || |  |  |||    | |   || || ||||  ||   || |||   || ||           ||||| |    || | ||   | |||   || |   | |  |    ||||      || | | |   || | |                   
--------------ACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgccctgctcatttatct----cgtggatgacttgaaaaaaaacgaggtttggatt--ctgggactctgcattcgtacgtgttgacatggatcttgttgcttctgtacgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161821353|gb|FC109492.1|FC109492
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCNAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14238456|gb|BG857272.1|BG857272
EST:     ACGACTTCCTGGGTGCTGANGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCA
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCA
EST: gi|14231499|gb|BG850315.1|BG850315
EST:     CGACTTNCTGNGTGCTGAGGAGGCCAAGAAGGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCC
genomic: CGACTTCCTGGGTGCTGAGGAGGCCAAGAAGG-TGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCC
EST: gi|14240091|gb|BG858907.1|BG858907
EST:     GGTGCTGAGTAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: GGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14231495|gb|BG850311.1|BG850311
EST:     TGGGTG-TGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: TGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161821967|gb|FC107623.1|FC107623
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161815965|gb|FC099916.1|FC099916
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161809458|gb|FC096515.1|FC096515
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161794542|gb|FC080819.1|FC080819
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|9027974|gb|BE238014.1|BE238014
EST:     ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161822375|gb|FC111125.1|FC111125
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14238455|gb|BG857271.1|BG857271
EST:     AAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: AAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14231498|gb|BG850314.1|BG850314
EST:     CGACTNTCCTGG-TGCTGANGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGT
genomic: CGACT-TCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGT
EST: gi|161818141|gb|FC102289.1|FC102289
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14229105|gb|BG847921.1|BG847921
EST:     GCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: GCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14233775|gb|BG852591.1|BG852591
EST:     AAGGTGGTCAAGGCCTTCCCTG                         AACATGTACCAGAAGCATTACGTGCCCCGCAAACTGCGCAACCGTGTCCG
genomic: AAGGTGGTCAAGGAC-TCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAA-CGTGTACG
EST: gi|161800071|gb|FC087594.1|FC087594
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161797736|gb|FC085184.1|FC085184
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|6544656|gb|AV390440.1|AV390440
EST:     ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161809582|gb|FC097393.1|FC097393
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161793042|gb|FC081360.1|FC081360
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161800748|gb|FC084709.1|FC084709
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161817310|gb|FC104916.1|FC104916
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14229106|gb|BG847922.1|BG847922
EST:     CGAACTTCCTGG-TGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGGCTGCGCA-CGTGTACGA
genomic: CGA-CTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAG-CTGCGCAACGTGTACGA
EST: gi|7709610|gb|AW772981.1|AW772981
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14231496|gb|BG850312.1|BG850312
EST:     GACTTTCCTGGGTGCTGAGNAGGCCCAAAAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: GAC-TTCCTGGGTGCTGAGGAGG-CCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161819523|gb|FC108312.1|FC108312
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161809363|gb|FC097096.1|FC097096
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14240092|gb|BG858908.1|BG858908
EST:     ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAAGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACG
EST: gi|161811254|gb|FC095353.1|FC095353
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161823017|gb|FC106587.1|FC106587
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14229352|gb|BG848168.1|BG848168
EST:     ACGACTTCCTGGGTG-TGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161802096|gb|FC089658.1|FC089658
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161810532|gb|FC094982.1|FC094982
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14242577|gb|BG861393.1|BG861393
EST:     ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCACCGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161817261|gb|FC104906.1|FC104906
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161793555|gb|FC078467.1|FC078467
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|23362525|gb|BU650345.1|BU650345
EST:     ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161823426|gb|FC105748.1|FC105748
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14238069|gb|BG856885.1|BG856885
EST:     GGCCAAAAAGGTGGTCAAGGACTCGCTG                         AACATGTTA-CAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGA
genomic: GGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATG-TACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGA
EST: gi|161820862|gb|FC108949.1|FC108949
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|23357985|gb|BU645805.1|BU645805
EST:     CAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: CAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161823425|gb|FC105747.1|FC105747
EST:     ACGATTTCCTGGGCACTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCACCGCAAGCTGCGCAA
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAA
EST: gi|15368172|gb|BI527598.1|BI527598
EST:     ACGACTTCCTGGGTGCTGAGTAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|161803656|gb|FC090568.1|FC090568
EST:     ACGATTTCCTGGGCGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
EST: gi|14229353|gb|BG848169.1|BG848169
EST:     ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTG                         AACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG
genomic: ACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgca ... gccgccgcagAACATGTACCAGGAGCACTACGTGCCCCGCAAGCTGCGCAACGTGTACGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgcagggcgcagcggcgaggggcgtgggttgtgtgcagaatggcaggccagggtcagccgcaagctagcatcgtcgtgtttagtcccagaacgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgttt