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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacaggctgtgtcggccactgtccataccgcccaccgccctgacagagccgccagcgtgcctgcacccctaacctgcacccatttactacagctgctctatatttgctgctattaattaacgtgcccatgtacatgactcgcgtgtgctcctgtcccgcttcttacaacacatgtccggtgtgtgaag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01675
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8576473|gb|BE129014.1|BE129014
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|10127075|gb|BE725779.1|BE725779
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|15367917|gb|BI527343.1|BI527343
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|161819692|gb|FC110730.1|FC110730
EST:     TGCATCGGCAATGTTTGTTTGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|8513770|gb|BE121665.1|BE121665
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|14235024|gb|BG853840.1|BG853840
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|10778258|gb|AV634938.1|AV634938
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|23363493|gb|BU651313.1|BU651313
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|15705113|gb|BI729402.1|BI729402
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|49459638|gb|BP087551.1|BP087551
EST:     TGCATCGGCAATG-TTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|9210580|gb|BE337495.1|BE337495
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|10770885|gb|AV621708.1|AV621708
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|8400964|gb|BE056598.1|BE056598
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|10782350|gb|AV639030.1|AV639030
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|8933158|gb|BE227919.1|BE227919
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|10125696|gb|BE724400.1|BE724400
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|15373603|gb|BI533029.1|BI533029
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|49458337|gb|BP086250.1|BP086250
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|161812247|gb|FC097815.1|FC097815
EST:     TGCATCGGCAATGTTTGTTTGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|161810681|gb|FC096834.1|FC096834
EST:     TGCATCGGCAATGTTTGTTTGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
EST: gi|15910544|gb|BI816399.1|BI816399
EST:     TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCG                         GTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC
genomic: TGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGgtaagcacag ... gtgtgtgaagGTTCGCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCAC