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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgcgggccgggcggggctggggtgaagcacatggggagcagcacgacaggagggcacttggcgggtgccgggcactcggcttggtgccgactc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01639
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49467899|gb|BP095760.1|BP095760
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10784603|gb|AV641275.1|AV641275
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10784314|gb|AV640986.1|AV640986
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|6547630|gb|AV393414.1|AV393414
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10783188|gb|AV639860.1|AV639860
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10790055|gb|AV627421.1|AV627421
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10789136|gb|AV626856.1|AV626856
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10791276|gb|AV628642.1|AV628642
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10784537|gb|AV641209.1|AV641209
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10792310|gb|AV629676.1|AV629676
EST:     TCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: TCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10792476|gb|AV629842.1|AV629842
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
EST: gi|10790801|gb|AV628167.1|AV628167
EST:     GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAG                         GCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC
genomic: GCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgc ... acctgctcagGCCGACAAGGAGCTGACGGCGCTCATCCGCCGCAAGTTCGCCATCAAGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCACCGCTCGCTGGTGGATGGCGTCGTGAGCCTGGCGCGCCGCGTGCAGgtgcggctgcgggccgggcggggctggggtgaagcacatggggagcagcacgacaggagggcacttggcgggtgccgggcactcggcttggtgccgactc

- - - - - -  TGGTGG
- - - - - - - GGTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcagca
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