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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGCTTCCTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccgcgcagcttgggcaactgctttcgcttgcgccgctcggtctttgtaggccgcgtgcaaccggcgaacccgtggacatcttatatgcatagc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01119
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15693756|gb|BI718061.1|BI718061
EST:     AACGCCAACTCCACGCCAGAGCAGCTCGA                         GATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
genomic: AACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccg ... gtgcatgcagGATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
EST: gi|10773798|gb|AV624621.1|AV624621
EST:     CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGA                         GATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGC
genomic: CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccg ... gtgcatgcagGATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGC
EST: gi|14233565|gb|BG852381.1|BG852381
EST:     CTCTTT-ATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAACAGCTCGA                         GATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
genomic: CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccg ... gtgcatgcagGATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
EST: gi|15693757|gb|BI718062.1|BI718062
EST:     CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGA                         GATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
genomic: CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccg ... gtgcatgcagGATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
EST: gi|16072687|gb|BI874683.1|BI874683
EST:     CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGA                         GATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
genomic: CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccg ... gtgcatgcagGATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
EST: gi|16072247|gb|BI874243.1|BI874243
EST:     CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGA                         GATGGCGGACGGNGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
genomic: CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccg ... gtgcatgcagGATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
EST: gi|16071661|gb|BI873657.1|BI873657
EST:     CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGA                         GATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG
genomic: CTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccg ... gtgcatgcagGATGGCGGACGGGGACGTCATAGACTGCGTTATCGAGCAGGTCGGCGGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAACGCCTATTGCAACAAGAAGGGCATGGATACTGCCTCGGTTCGCTTCCTCTTTGATGGGGAGCGCGTCAACGCCAACTCCACGCCAGAGCAGCTCGAgtgagtgccgcgcagcttgggcaactgctttcgcttgcgccgctcggtctttgtaggccgcgtgcaaccggcgaacccgtggacatcttatatgcatagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcggtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatatgc