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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACTGGCTTTGGAAAGGTGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcataaggctttaatgcagcattatggctgcgttctgccgcatggggttggtgtacggggtgtacggcgggcgggcgccccagacgcaggccatatgccaggaaagcatgcccgcgcccaacacggtagtgctgcaagcacaatcatataatgccgcacatccgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP00834
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22058843|gb|BQ813132.1|BQ813132
EST:     TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAG                         CTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
genomic: TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcat ... atccgcgcagCTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
EST: gi|161798903|gb|FC084645.1|FC084645
EST:     TGGTCAGTCATGTGGTGATCGGGCTCAAGACAGCCAAGGGCACCAAACAG                         CTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
genomic: TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcat ... atccgcgcagCTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
EST: gi|6547112|gb|AV392896.1|AV392896
EST:     TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAG                         CTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
genomic: TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcat ... atccgcgcagCTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
EST: gi|161804509|gb|FC088837.1|FC088837
EST:     TGGTCAGTCATGTGGTGATCGGGCTCAAGACAGCCAAGGGCACCAAACAG                         CTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
genomic: TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcat ... atccgcgcagCTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
EST: gi|161795055|gb|FC078199.1|FC078199
EST:     TGGTCAGTCATGTGGTGATCGGGCTCAAGACAGCCAAGGGCACCAAACAG                         CTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
genomic: TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcat ... atccgcgcagCTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
EST: gi|161810747|gb|FC098512.1|FC098512
EST:     TGGTCAGTCATGTGGTGATCGGGCTCAAGACAGCCAAGGGCACCAAACAG                         CTCAAGCTGGATCCCACCATCTACGACGCGCTCCNAAAGGAGAAGGTGGCG
genomic: TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcat ... atccgcgcagCTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
EST: gi|9458853|gb|BE452558.1|BE452558
EST:     TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAG                         CTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAGGGAGAAGGTGGCG
genomic: TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcat ... atccgcgcagCTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
EST: gi|22058844|gb|BQ813133.1|BQ813133
EST:     TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAG                         CTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG
genomic: TGGTCAGTCACGTGGTGATCGGGCTCAAGACAGCTAAGGGCACCAAACAGgtgagcgcat ... atccgcgcagCTCAAGCTGGATCCCACCATCTACGACGCGCTCCAAAAGGAGAAGGTGGCG