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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGCTTCGGTGGCCCCCGCGAGGGTGGCCGCGAGGGCTACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggctttgggtcaaggggtccggcgcgcgctcgtgttcggcattctttttgttccattgttggccctgctgattcttagaatggagggacagggcaacgaatggtgtcgggggacagggaggactcgtccagtcgggggcaccacaaactcacgcgccgtgctgcgtgtcctgcgctgcttgcgctcccctgcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP00807
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7545761|gb|AW676249.1|AW676249
EST:     CCGCGGTGCTCCCCGCGAGGGCCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCT
genomic: CCGCGGTGCTCCCCGCGAGGGC-GGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCT
EST: gi|22055366|gb|BQ811781.1|BQ811781
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGC
EST: gi|10791471|gb|AV628837.1|AV628837
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCG
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCG
EST: gi|8400927|gb|BE056561.1|BE056561
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|22055736|gb|BQ811996.1|BQ811996
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|22055379|gb|BQ811789.1|BQ811789
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|34991020|gb|CF564937.1|CF564937
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGTTCGGGCGCCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|16073576|gb|BI875572.1|BI875572
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGTTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTA
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTA
EST: gi|22057747|gb|BQ812714.1|BQ812714
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|6544611|gb|AV390395.1|AV390395
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|161799488|gb|FC086075.1|FC086075
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|22058393|gb|BQ812976.1|BQ812976
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACA-G                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTC
EST: gi|15372078|gb|BI531504.1|BI531504
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCG-CAAG                         GCCGGCGCCCCCCGTGCCTACCAGCCCCAGTTCGGCG
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCG
EST: gi|34988701|gb|CF562618.1|CF562618
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCC
EST: gi|23363360|gb|BU651180.1|BU651180
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCG
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCG
EST: gi|22053726|gb|BQ810904.1|BQ810904
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACA-G                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGC
EST: gi|34984781|gb|CF558698.1|CF558698
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|34991521|gb|CF565438.1|CF565438
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|22055477|gb|BQ811843.1|BQ811843
EST:     CGCGGTGCTCCCCGCGAGGGGCGGCGGCTNTCG-CCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTTCGGGCGGCTT
genomic: CGCGGTGCTCCCCGCGAGGG-CGGCGGCT-TCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCT-CGGGCGGCTT
EST: gi|22056585|gb|BQ812368.1|BQ812368
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|161813106|gb|FC104681.1|FC104681
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|22055837|gb|BQ812082.1|BQ812082
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTT
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTT
EST: gi|22072325|gb|BQ821663.1|BQ821663
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|22052860|gb|BQ810443.1|BQ810443
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
EST: gi|161813107|gb|FC104682.1|FC104682
EST:     ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAG                         GCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC
genomic: ACCGCGGTGCTCCCCGCGAGGGCGGCGGCTTCGGCCGCGGTGCCGACAAGgtgaggcttt ... ccctgcacagGCCGGCGCCCCCGGTGCCTACCAGCCCCAGTTCGGCGGCTCGGGCGGCTTC