1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGCTGCCCGGGGGCAAGGACGACGCGTCCCAGAAGCTGGCTAAGATTGAGGAGGAGCTGACGGACCTCGATAAGATTCACGAACAGgtgcgccagcgtgattgatgcatgatggtgactactgttggtggtggaaggcgtggagcgcagccgggagctggtgcaggtggcccctgtgctgaggggg...
species | Chlamydomonas reinhardtii |
transcript | EDP00437 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGCTAAGATTGAGGAGGAGCTGACGGACCTCGATAAGATTCACGCACAG GTGGACAAGCAGGCGAACAACGTGACCACGCGCCTGCTCACGGTGGGCTACEST: gi|161801828|gb|FC089585.1|FC089585
genomic: TGGCTAAGATTGAGGAGGAGCTGACGGACCTCGATAAGATTCACGAACAGgtgcgccagc ... tggtgcgcagGTGGACAAGCAGGCGAACAACGTGACCACGCGCCTGCTCACGGTGGGCTAC
EST: TGGCTAAGATTGAGGAGGAGCTGACGGACCTCGATAAGATTCACGCACAG GTGGACAAGCAGGCGAACAACGTGACCACGCGCCTGCTCACGGTGGGCTAC
genomic: TGGCTAAGATTGAGGAGGAGCTGACGGACCTCGATAAGATTCACGAACAGgtgcgccagc ... tggtgcgcagGTGGACAAGCAGGCGAACAACGTGACCACGCGCCTGCTCACGGTGGGCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGCCCGGGGGCAAGGACGACGCGTCCCAGAAGCTGGCTAAGATTGAGGAGGAGCTGACGGACCTCGATAAGATTCACGAACAGgtgcgccagcgtgattgatgcatgatggtgactactgttggtggtggaaggcgtggagcgcagccgggagctggtgcaggtggcccctgtgctgaggggg
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctg