1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGCCAGAACCGGGAGTATGAGGACCTTGGGAAGTTCTCGCTCGCCAACAAATGCCTGGAGgtgcgtgcttggacaaaactcccacctcgcccgtagcatacattttcaccttgccattcattagggatcttgcagggctacttgcggtgagcagtacggc...
species | Chlamydomonas reinhardtii |
transcript | EDP00021 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGGAGTATGAGGACCTTGGGAAGTTCTCGCTCGCCAACAAATGCCTGGAG GAGGCCGGCTTCTTCGGCAAGCGCGCCGAGCTGACCAAAGCCTGCTGGTCCEST: gi|14226991|gb|BG845807.1|BG845807
genomic: GGGAGTATGAGGACCTTGGGAAGTTCTCGCTCGCCAACAAATGCCTGGAGgtgcgtgctt ... acaaacacagGAGGCCGGCTTCTTCGGCAAGCGCGCCGAGCTGACCAAAGCCTGCTGGTCC
EST: GGGAGTATGAGGACCTTGGGAAGTTCTCGCTCGCCAACAAATGCCTGGAG GAGGCCGGCTTCTTCGGCAAGCGCGCCGAGCTGACCAAAGCCTGCTGGTCCEST: gi|23366954|gb|BU654773.1|BU654773
genomic: GGGAGTATGAGGACCTTGGGAAGTTCTCGCTCGCCAACAAATGCCTGGAGgtgcgtgctt ... acaaacacagGAGGCCGGCTTCTTCGGCAAGCGCGCCGAGCTGACCAAAGCCTGCTGGTCC
EST: CGCTCGCCAACAAATGCCTGGAG GAGGCCGGCTTCTTCGGCAAGCGCGCCGAGCTGACCAAAGCCTGCTGGTCC
genomic: CGCTCGCCAACAAATGCCTGGAGgtgcgtgctt ... acaaacacagGAGGCCGGCTTCTTCGGCAAGCGCGCCGAGCTGACCAAAGCCTGCTGGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCAGAACCGGGAGTATGAGGACCTTGGGAAGTTCTCGCTCGCCAACAAATGCCTGGAGgtgcgtgcttggacaaaactcccacctcgcccgtagcatacattttcaccttgccattcattagggatcttgcagggctacttgcggtgagcagtacggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacat