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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCACCCCGTGCTGCTGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggttggtttctttgcacaagtcacagacctaccgttccctgcaaaaccgcctacctccaaagctccgcccttactccacaccaatttcttctttgctccccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98923
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10781299|gb|AV637979.1|AV637979
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|22053164|gb|BQ810620.1|BQ810620
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|7687875|gb|AW758521.1|AW758521
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|10789628|gb|AV626993.1|AV626993
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|10126118|gb|BE724822.1|BE724822
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|10777850|gb|AV634530.1|AV634530
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|22053091|gb|BQ810588.1|BQ810588
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTTTAGACCTTTAACGTGCCGGCCATG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATG
EST: gi|22069702|gb|BQ819234.1|BQ819234
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|14228289|gb|BG847105.1|BG847105
EST:     GACTGAGGCCCCCCTGAACCCCAAGGCCAACCTGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: GACTGAGGCCCCCCTGAACCCCAAGGCCAACC-GCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|10127691|gb|BE726395.1|BE726395
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|161797057|gb|FC085662.1|FC085662
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|22071637|gb|BQ820975.1|BQ820975
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|22070013|gb|BQ819473.1|BQ819473
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|9458838|gb|BE452551.1|BE452551
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|49461896|gb|BP089809.1|BP089809
EST:     TGACTGAGGTCCCCCTGAACCCCAAGGCCAAACGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCG
EST: gi|14240923|gb|BG859739.1|BG859739
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|8576564|gb|BE129201.1|BE129201
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|49464429|gb|BP092342.1|BP092342
EST:     GACTGATGGCCCCC-TGAACCCCAAGGACAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGCTGC-GGACATGTACGTGGCTATCCAGGC
genomic: GACTGA-GGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACG-TGCCGGCCATGTACGTGGCTATCCAGGC
EST: gi|10191366|gb|BE761442.1|BE761442
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
EST: gi|23362091|gb|BU649911.1|BU649911
EST:     TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAG                         ATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG
genomic: TGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggt ... ctccccgcagATCATGTTCGAGACCTTCAACGTGCCGGCCATGTACGTGGCTATCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCACCCCGTGCTGCTGACTGAGGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGgtgcgggggttggtttctttgcacaagtcacagacctaccgttccctgcaaaaccgcctacctccaaagctccgcccttactccacaccaatttcttctttgctccccgcag

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