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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTGGAAGGAGCTGGGCGAGGAGCTGAAGGACGTGGGTTCCATCGTCATTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatgcgcgggatctgggaggttggagggagaggaagggaggcgtggctgcccctgggcaggggcgattgggaccttgctgaggggcgtgccggt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98781
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16071841|gb|BI873837.1|BI873837
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|161809958|gb|FC097639.1|FC097639
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGCGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|22075495|gb|BQ824271.1|BQ824271
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|16071822|gb|BI873818.1|BI873818
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|16072415|gb|BI874411.1|BI874411
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|15702254|gb|BI726559.1|BI726559
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|161796779|gb|FC084539.1|FC084539
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGCGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|22066782|gb|BQ817138.1|BQ817138
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|22066783|gb|BQ817139.1|BQ817139
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
EST: gi|15702253|gb|BI726558.1|BI726558
EST:     TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAG                         GTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG
genomic: TTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatg ... cgctgcgcagGTCAAGGGCTACCCCACGCTCAAGGTGATCCACAAGGGTGAGGAGATCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCTGGAAGGAGCTGGGCGAGGAGCTGAAGGACGTGGGTTCCATCGTCATTGCCCACGTCGACTGCACCACCGACCGCGACGTGTGCACCAACGCCCAGgtgcggcatgcgcgggatctgggaggttggagggagaggaagggaggcgtggctgcccctgggcaggggcgattgggaccttgctgaggggcgtgccggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgc