Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaagcgccggcgggcgggacttcatggcattcatcggcagcaggcccaggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98738
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: GLYMA10G18310.1 (Glycine max), 5'ss of exon 4
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaagcgccg-gcgggcgggacttcatggcattcatcggcagcaggcc--caggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc
             || |  ||||| ||| | |||||| | || || ||||| ||||||||||| ||||| |||||||| |||||||| ||  |||||||||||  | | ||      || |      | | || |   | ||  ||    |    |  ||   |  ||||   | | | | |           | |  |    
CTTCCGAACCAAGGTATTTCACCCTAACATAAACAGCAATGGAAGTATCTGTCTGGACATTCTGAAAGAGCAGTGGAGTCCTGCCCTTACAGTTTCCAAGgta--ttaggctttatacgtgtcattttccttgcctaacttcaccaatttgttttcttgatgatttaatgcatcagtagatccttgaactttttaggaattt-

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: GLYMA08G35600.1 (Glycine max), 5'ss of exon 3
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaa--gcgccggcgggcgggacttcatggcattcatcggca-gcaggcccaggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc
             || |  ||||| ||| | |||||  | || || |||||||| ||||| |||||||| || |||||||||||||| || || || |||||||    |    |            | ||       ||  | |  | | |  |  |  |  ||| ||  |||  |                           
ATTCTGCACAAAGGTTTTTCACCCTAACATCAACAGTAATGGAAGTATCTGCCTTGACATCCTCAAAGAGCAATGGAGCCCTGCCCTCACAATATCTAAGgtaatctgatgatgattattatttttatttttaaatttttcttgtaatggatacttaaaatgttaaaactttgtag---------------------------

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: Vv19s0015g01190.t01 (Vitis vinifera), 5'ss of exon 4
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtca-agcgccggcgggcgggacttcatggcattcatcggcagcaggcccaggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc--
             |||| |||||||||| | |||||| | || ||||||||||| || || || ||||| ||||||||||||||||| || || |||||||||| |   | |             | ||      ||   ||        |  ||  | ||   ||     |   |   | | |     ||  |   || |  
CTTCAGAACAAAGGTGTTCCACCCCAACATTAACAGCAATGGTAGCATCTGCCTTGATATCCTGAAAGAGCAGTGGAGCCCTGCCCTCACAATATCCAAGgtaatttgcatctttaatacatttaatttataaagatgtttcccttagttgttcataagatggtaaatgaacctta---ctgtatacttccaaggtcccactt

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: PP1S65_161V6.1 (Physcomitrella patens), 5'ss of exon 3
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaagc--gccggcgggcgggacttcatggcattcatcggcagcaggcccaggacattacaatgttgcgggaaagcgggaggt-gccctggtgaccgc
             || |  ||||| ||  | || ||  | || |||||||||||||| |||||||| || || |||||||||||  | ||||| ||||||||  ||    |  ||  |    | |   ||    ||   |||               | ||  |     |||   | | |  |    | ||  || |||    
CTTCAGGACTAAGGTTTTTCACCCTAATATTAATAGTAATGGAAGCATCTGCCTGGATATTCTCAAGGAGCAATGGAGCCCTGCTTTAACCATATCCAAGgtgtgtttcccctgcatgttatccgaggttttctgccgccattctttatctttgtccgccagcagttctttgtatgcatgttgataatcgctgtgttgaa---

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: PP1S69_31V6.1 (Physcomitrella patens), 5'ss of exon 3
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaagcgccggcgg-gcgggacttcatggcattcatcggcagcaggcccaggaca--ttacaatgttgcgggaaagcgggaggtgccctggtgaccgc
             || | |||||||||| | || ||  | || |||||||||||||| ||||| || || |||||||||||||| || ||||| || |||||  ||     |    ||  |  |||  |  ||   | | |        | |   |   |    |  ||||   |   ||  || |||      || |   | 
GTTCAGGACCAAGGTTTTCCACCCCAACATCAATAGTAATGGGAGCATCTGCCTGGATATTCTGAAGGAGCAGTGGAGCCCTGCTCTAACCATATCTAAGgtgcgttggttgtacacgtcgttggagctgttgt--tccgtgaatgttggtctttgtgtaagcgaggatgtgaggttgaaatggtaggatggtgggaggggg-

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: EFJ27529 (Selaginella moellendorffii), 5'ss of exon 3
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagt-caagcgccggc--------gggcgggacttcatggcattcatcggcagcaggcccaggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc
             ||||  || |||||| | || ||| | || |||||||| || ||||||||||| || ||||||||||| ||| |||| || ||||||||  || |   |  || |        | | | |  ||| ||   |  || |      |  ||    | ||     | | ||    | ||   | |   |  |       
ATTCAGAACAAAGGTGTTTCATCCCAACATCAATAGCAATGGTAGCATCTGTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctttcctcgacaaaaccaagagagaggtttcgtgttctaaatggcttttcgttccttttctttctctcgct-cgctcgatcgatcgatttaccag-------

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: EFJ35297 (Selaginella moellendorffii), 5'ss of exon 3
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaagcgccgg-----cgggcgggacttcatg-gcattcatcggcagcaggcccaggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc
             ||||  || |||||| | || ||| | || |||||||| || ||||||||||| || ||||||||||| ||| |||| || ||||||||  ||      |  |     |  | | ||  ||  | |   | |  ||      |  |      || |  |    ||    | ||   | |   |  |       
ATTCAGAACAAAGGTGTTTCATCCCAACATCAATAGCAATGGTAGCATCTGTCTCGACATTCTCAAGGAGCAGTGGAGCCCCGCCTTGACAATCTCCAAGgtttgttctttcctcgacaaccaagagagagctctcgtgttctaaatggtttttcgttccttttctttcgctcgctcgctcgatcgatcgatttaccag-------

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: EFJ15547 (Selaginella moellendorffii), 5'ss of exon 3
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaagcgccggcgggcgggacttcatggcattcatcggcagcaggcccaggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc
             || | |||||| ||| | |||||| | || ||||||||||| ||||| ||||| || ||||||||||| ||  |||| || |||||||||||  |||| |  |      |   ||||    ||  |||     |    | |      |    | || |  |                          
GTTCCGGACGAAAGTCTTCCACCCAAACATCAACAGCAATGGAAGCATCTGCCTCGACATCCTCAAGGAGCAGTGGAGCCCCGCATTGACGATCTCCAAGgtaaga-aagctcttggcttttgcttttcactcgatcaatccatcactcctcgatcttggtttcttcttcccag--------------------------

upper sequence: EDO98738 (Chlamydomonas reinhardtii), 5'ss of exon 4
lower sequence: EFJ11261 (Selaginella moellendorffii), 5'ss of exon 3
-------------GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaagcgccggcgggcgggacttcatggcattcatcggcagcaggcccaggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc
             || | |||||| ||| | |||||| | || ||||||||||| ||||| ||||| || ||||||||||| ||  |||| || |||||||| ||  |||| | |||    |    ||||    ||  |||     |  | | |      |    | || |  |                          
GTTCCGGACGAAAGTCTTCCACCCAAACATCAACAGCAATGGAAGCATCTGCCTCGACATCCTCAAGGAGCAGTGGAGCCCCGCATTGACGATCTCCAAGgtgaga-aagctctggcttttgct-tttcactcgatcaatccatcactcgtcgatcttggtttcttcttcccag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14226605|gb|BG845437.1|BG845437
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|49459093|gb|BP087006.1|BP087006
EST:     CCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: CCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10773113|gb|AV623936.1|AV623936
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10781533|gb|AV638213.1|AV638213
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGAT
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGAT
EST: gi|8513778|gb|BE121673.1|BE121673
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10780538|gb|AV637218.1|AV637218
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGA
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGA
EST: gi|22068097|gb|BQ818047.1|BQ818047
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10771109|gb|AV621932.1|AV621932
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10191437|gb|BE761513.1|BE761513
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10771256|gb|AV622079.1|AV622079
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|6541542|gb|AV387326.1|AV387326
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|55562633|gb|AV624073.2|AV624073
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAA
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAA
EST: gi|6543241|gb|AV389025.1|AV389025
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|9461041|gb|BE453535.1|BE453535
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10772092|gb|AV622915.1|AV622915
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10771174|gb|AV621997.1|AV621997
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|8400970|gb|BE056604.1|BE056604
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|8933117|gb|BE227878.1|BE227878
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|161822462|gb|FC109217.1|FC109217
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|8828122|gb|BE211964.1|BE211964
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|14239897|gb|BG858713.1|BG858713
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|49464890|gb|BP092803.1|BP092803
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGAACCCAAACCCGATGA
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGA
EST: gi|22054721|gb|BQ811487.1|BQ811487
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10782498|gb|AV639178.1|AV639178
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10770314|gb|AV621139.1|AV621139
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|22075597|gb|BQ824373.1|BQ824373
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|49464976|gb|BP092889.1|BP092889
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGNTCCTTGCTCACGGACCCCAANCCCGATGANCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10776974|gb|AV633654.1|AV633654
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCT
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCT
EST: gi|22076451|gb|BQ825227.1|BQ825227
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|22064118|gb|BQ815624.1|BQ815624
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10128259|gb|BE726963.1|BE726963
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|8933081|gb|BE227842.1|BE227842
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10781173|gb|AV637853.1|AV637853
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCT
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCT
EST: gi|8576667|gb|BE129304.1|BE129304
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10777043|gb|AV633723.1|AV633723
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|9210517|gb|BE337432.1|BE337432
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10773698|gb|AV624521.1|AV624521
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|6545987|gb|AV391771.1|AV391771
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|22061172|gb|BQ814121.1|BQ814121
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|49463815|gb|BP091728.1|BP091728
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAAACCCGATGANCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10776512|gb|AV633192.1|AV633192
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|22060484|gb|BQ813805.1|BQ813805
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|8513846|gb|BE121741.1|BE121741
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|6551868|gb|AV397652.1|AV397652
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|49463459|gb|BP091372.1|BP091372
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGAT
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGAT
EST: gi|10126442|gb|BE725146.1|BE725146
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10772061|gb|AV622884.1|AV622884
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|23365957|gb|BU653777.1|BU653777
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10773703|gb|AV624526.1|AV624526
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10780969|gb|AV637649.1|AV637649
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTT
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTT
EST: gi|16071962|gb|BI873958.1|BI873958
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|6547270|gb|AV393054.1|AV393054
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|8513636|gb|BE121531.1|BE121531
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|22075504|gb|BQ824280.1|BQ824280
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10773848|gb|AV624671.1|AV624671
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|10772652|gb|AV623475.1|AV623475
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|6546371|gb|AV392155.1|AV392155
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAA                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|22068196|gb|BQ818135.1|BQ818135
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
EST: gi|8286753|gb|BE024312.1|BE024312
EST:     GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAG                         GTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG
genomic: GCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaag ... cctgctgcagGTGCTGCTCTCGATCTGCTCCTTGCTCACGGACCCCAACCCCGATGACCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTACCACCCCAACGTGAACAGCCAGGGCAGCATCTGCCTGGACATTCTCAAAGACCAGTGGAGCCCTGCCCTGACCATTTCCAAGgtaagtcaagcgccggcgggcgggacttcatggcattcatcggcagcaggcccaggacattacaatgttgcgggaaagcgggaggtgccctggtgaccgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG