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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCGCTTCCAAGATGAAGAACGCGCAGGTCGCTGTGGAGCAGTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttgatgccctggcggagcagtggggtagccaggggagctgcagtctttgattcgctcacggaacgatcgtgccccttcgtcgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97956
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10793767|gb|AV631133.1|AV631133
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|161806299|gb|FC092278.1|FC092278
EST:     GTCTCGCGGCATTGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|10790688|gb|AV628054.1|AV628054
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|6541786|gb|AV387570.1|AV387570
EST:     GTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|10127224|gb|BE725928.1|BE725928
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|14229626|gb|BG848426.1|BG848426
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|6546060|gb|AV391844.1|AV391844
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGACGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|161807848|gb|FC098961.1|FC098961
EST:     GTCTCGCGGCATTGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|49464988|gb|BP092901.1|BP092901
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|15372595|gb|BI532021.1|BI532021
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|161822022|gb|FC105975.1|FC105975
EST:     GTCTCGCGGCATTGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|7615315|gb|AW720762.1|AW720762
EST:     GTCTCGTGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|15369223|gb|BI528649.1|BI528649
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|239841871|gb|GR283728.1|GR283728
EST:     GTCTCGCGGCTTTGTGAACCCGTTCGTGCGCCTTTTC-GTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCGGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|161809306|gb|FC097065.1|FC097065
EST:     GTCTCGCGGCATTGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|239841870|gb|GR283727.1|GR283727
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
EST: gi|9210378|gb|BE337293.1|BE337293
EST:     GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAG                         CCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC
genomic: GTCTCGCGGCATCGTGAACCCGTTCGTGCGCCTTTTCGGTGACTTCCCAGgtgcggttga ... cgtcgcgcagCCATCGAGGGCAAGCAGAACATCACCGTGGCCGTCTCCTCGGACCGTGGTC