1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaaggacacatatgtgtgcatttgtcgtgacttgaggtgtctaggatacgattgctggctgccagagggggcaatgcaatgcgtgcaagctcg...
species | Chlamydomonas reinhardtii |
transcript | EDO97746 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG GTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGEST: gi|22066441|gb|BQ816941.1|BQ816941
genomic: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaa ... atctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
EST: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG GTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGEST: gi|10778504|gb|AV635184.1|AV635184
genomic: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaa ... atctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
EST: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG GTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGEST: gi|15372069|gb|BI531495.1|BI531495
genomic: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaa ... atctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
EST: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAG GTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
genomic: TGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaa ... atctgaacagGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGgtgagcgcaaggacacatatgtgtgcatttgtcgtgacttgaggtgtctaggatacgattgctggctgccagagggggcaatgcaatgcgtgcaagctcg
- - - - - - - - GGAGCA
- - - - - - - - - GAGCAG
- - - - - - - - - - GCAGCT
- - - - - - - - - - CAGCTG
- - - - - - - - - - - GCTGGA
- - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc