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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGCACACGGCGCTGCTGACGCTCAAGGAAGGCTTCGAGGGGCAATTGAGTGGCTCCAACATCGAGGTCGGCATCATCGGGCCAGACAAGACTTTCAAGgtgagcgcatcggatgccgggcggcgtaaaggtggatggttttgggaatggacgacgcgtttggcgctcagccttgaatccttcgcgcatgcaaaatgtttcctgtactctgggctcgcttcgtaggggtcccgcatcgactaactagcgccctgcgaatgccgccctccag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97600
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161791279|gb|FC081178.1|FC081178
EST:     GTGGCTCCAACATCGAGGTCGGCATCATCGGGCCAGACAAGACTTTCAAA                         GTGCTGAGCGAGGCGGAGGTCAGCGACTACCTTCAGGAGGTGGAGTAACGC
genomic: GTGGCTCCAACATCGAGGTCGGCATCATCGGGCCAGACAAGACTTTCAAGgtgagcgcat ... cgccctccagGTGCTGAGCGAGGCGGAGGTCAGCGACTACCTTCAGGAGGTGGAGTAACGC
EST: gi|161792152|gb|FC077220.1|FC077220
EST:     GTGGCTCCAACATCGAGGTCGGCATCATCGGGCCAGACAAGACTTTCAAG                         -TGCTGAGCGAGGCGGAGGTCAGCGACTACCCTTCAG-AGGTGGAGT
genomic: GTGGCTCCAACATCGAGGTCGGCATCATCGGGCCAGACAAGACTTTCAAGgtgagcgcat ... cgccctccagGTGCTGAGCGAGGCGGAGGTCAGCGACTACC-TTCAGGAGGTGGAGT