Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCCCCGCCGGCTCGTACAACGGCTACTGGGCTGACCCCTACACCATCTTCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggagggaggggcaggcgctcgtcgggcgaagaagaagaatctgcgcaggaaacggttttacttgaagcctcgggtgcagcgctggagctgtggctgattacagttacaaccgataactgatcccctcctcgcatgtgtctctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97521
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369633|gb|BI529059.1|BI529059
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|10191248|gb|BE761324.1|BE761324
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161819180|gb|FC109867.1|FC109867
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161806371|gb|FC088996.1|FC088996
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161812526|gb|FC099421.1|FC099421
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161814252|gb|FC102057.1|FC102057
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|16071827|gb|BI873823.1|BI873823
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161792543|gb|FC081797.1|FC081797
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161803217|gb|FC093236.1|FC093236
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|7615600|gb|AW721040.1|AW721040
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161816281|gb|FC102117.1|FC102117
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|9210231|gb|BE337146.1|BE337146
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161818086|gb|FC102260.1|FC102260
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|6541678|gb|AV387462.1|AV387462
EST:     CGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: CGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|9460442|gb|BE453233.1|BE453233
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTTCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|9458422|gb|BE452232.1|BE452232
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161792947|gb|FC081265.1|FC081265
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|7593234|gb|AW707373.1|AW707373
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|14234425|gb|BG853241.1|BG853241
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCCAGTACTTCCTGGGCCTGGA
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAG-CAGTACTTCCTGGGCCTGGA
EST: gi|22070078|gb|BQ819511.1|BQ819511
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161799673|gb|FC085207.1|FC085207
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161807653|gb|FC099806.1|FC099806
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161797639|gb|FC083696.1|FC083696
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161819941|gb|FC107508.1|FC107508
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|10790625|gb|AV627991.1|AV627991
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGC
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGC
EST: gi|7686823|gb|AW757471.1|AW757471
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|7687556|gb|AW758202.1|AW758202
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACT
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACT
EST: gi|6547401|gb|AV393185.1|AV393185
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161792483|gb|FC080411.1|FC080411
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|16071987|gb|BI873983.1|BI873983
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|7426764|gb|AW660937.1|AW660937
EST:     TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACNCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
EST: gi|161813946|gb|FC105586.1|FC105586
EST:     TCTTCGTGGAGATTGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAG                         GACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG
genomic: TCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggag ... gtctctgcagGACTTCCGCTACCCCGGCTCCATGGGCCAGCAGTACTTCCTGGGCCTGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCCCCGCCGGCTCGTACAACGGCTACTGGGCTGACCCCTACACCATCTTCTTCGTGGAGATCGTGGCTATGCAGTTCGCTGAGCTGCGCCGCCTTCAGgtgcggggagggaggggcaggcgctcgtcgggcgaagaagaagaatctgcgcaggaaacggttttacttgaagcctcgggtgcagcgctggagctgtggctgattacagttacaaccgataactgatcccctcctcgcatgtgtctctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC