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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCCAAGGTCCTGAACGCCGGCCTGGCTGAGGTGGACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgctacggggcttctatttccttccccctctccacctgcacacgcaggcctgcctccattgcagcatgcctacagcctgtccatgcatcactctaaccgcacttggcacgtaaatggctctggtttggccatacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO97448
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10781349|gb|AV638029.1|AV638029
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10126110|gb|BE724814.1|BE724814
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|49463440|gb|BP091353.1|BP091353
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10126090|gb|BE724794.1|BE724794
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|6550255|gb|AV396039.1|AV396039
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAACTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10788776|gb|AV626496.1|AV626496
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10126692|gb|BE725412.1|BE725412
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|6543230|gb|AV389014.1|AV389014
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAA
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10784593|gb|AV641265.1|AV641265
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|15698243|gb|BI722548.1|BI722548
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10792084|gb|AV629450.1|AV629450
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10127493|gb|BE726197.1|BE726197
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|23363367|gb|BU651187.1|BU651187
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10793828|gb|AV631194.1|AV631194
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|49469449|gb|BP097310.1|BP097310
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|8286884|gb|BE024443.1|BE024443
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10769315|gb|AV620140.1|AV620140
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10790498|gb|AV627864.1|AV627864
EST:     GAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: GAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10792385|gb|AV629751.1|AV629751
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10793783|gb|AV631149.1|AV631149
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|49470468|gb|BP098329.1|BP098329
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10771492|gb|AV622315.1|AV622315
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
EST: gi|10792252|gb|AV629618.1|AV629618
EST:     ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAG                         GGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG
genomic: ACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgc ... ggccatacagGGCCTGGAGCTGATCCCCTCGGAGAACTTCGTGTCTGCCTCGGTGATGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCCCAAGGTCCTGAACGCCGGCCTGGCTGAGGTGGACCCAGATCTCTTCGACATCATTGAGAAGGAGAAGAACCGCCAGTTCAAGgtgcgcctgctacggggcttctatttccttccccctctccacctgcacacgcaggcctgcctccattgcagcatgcctacagcctgtccatgcatcactctaaccgcacttggcacgtaaatggctctggtttggccatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC